Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62670 1598 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 1580 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT5G57350 1358 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT1G80660 1356 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT4G30190 1350 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT3G42640 1348 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G18960 1337 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT2G07560 1328 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT2G24520 1316 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT3G60330 1286 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042183 [exp] 1703 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10001631 [exp] 1373 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10024105 [exp] 1364 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026946 [exp] 1349 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10040166 [exp] 1335 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1335 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10026224 [exp] 1241 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10028201 [exp] 1229 / 0 AT3G60330 1422 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10042445 [exp] 1228 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G066000 [exp] 1623 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 1620 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.014G046300 [exp] 1394 / 0 AT3G60330 1462 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Potri.018G090300 [exp] 1380 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G275000 [exp] 1370 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G165900 [exp] 1370 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G188600 [exp] 1355 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1354 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.003G080500 [exp] 1351 / 0 AT5G62670 1379 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.006G005900 [exp] 1346 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10003259 pacid=23182511 polypeptide=Lus10003259 locus=Lus10003259.g ID=Lus10003259.BGIv1.0 annot-version=v1.0 ATGGGGGAGAAAGCTGAAGTTTTGGAGGGGGTGTTGAAGGAAACGGTTGATTTGGAGAACATACCCATTGAAGAAGTGTTTGAGAATCTGAGATGTAGCA GGGAAGGTCTTACCACTCAGGCTGCTGAGGATAGGCTCACCATCTTTGGCTACAATAAGCTTGAAGAGAAAAAGGAGAGCAAGTTCTTGAAGTTCTTGGG GTTCATGTGGAATCCTTTGTCCTGGGTGATGGAAGCTGCTGCAATCATGGCGATTGCCCTTGCTAATGGAGGAGGAAAGCCTCCGGATTGGCAAGACTTT GTGGGTATTATCACGCTGTTGTTGATCAACTCAACCATCAGTTTTATCGAAGAGAACAATGCTGGTAATGCGGCAGCTGCTCTCATGGCTAGTCTAGCTC CCAAAGCAAAGGTGCTTCGAGATGGGAGGTGGAGCGAACAAGAGGCTTCAATTCTGGTACCTGGTGACATCATCAGTATCAAACTTGGAGACATTATCCC TGCAGATGCTCGGTTGCTGGAAGGTGATCCTCTGAAAATTGATCAGTCTGCTCTAACTGGAGAGTCTCTTCCAGTGACGAAAGGTCCCGGAGATGGTATT TATTCCGGTTCGACTTGTAAGCAAGGAGAAATTGAAGCTGTGGTTATTGCGACTGGTGTTCATACCTTCTTTGGCAAAGCAGCTCATCTTGTGGATACCA CTAACCAAGTTGGACACTTCCAAAAGGTGTTGACAGCAATTGGGAACTTTTGCATATGCTCGATTGGAGTGGGAATGCTTATAGAGCTTATTGTCATGTA CCCCATCCAAGATAGGCAGTATCGTCCTGGAATCGACAATCTTCTTGTGCTGCTTATTGGAGGGATTCCAATTGCCATGCCGACGGTTTTGTCAGTTACC ATGGCAATTGGTTCTCATAGGCTATCTCAACAGGGAGCCATCACAAAGAGAATGACTGCAATTGAAGAGATGGCAGGCATGGACGTGCTTTGCAGTGACA AGACTGGAACTTTGACATTGAACAAACTTACGGTTGATAAGAATCTTATCGAGGTGTTCTCTAAGGGAATTGATGCAGATACTGTGGTTTTAATGGCTGC TAGAGCCTCAAGGACAGAGAACCAAGATGCAATTGATGCAGCCATCGTCGGGATGCTGGCTGATCCTAAGGAAGCACGTGCTGGAGTCCAGGAAATTCAT TTTCTGCCATTCAATCCTACTGATAAGCGGACAGCATTGACCTATTTAGACGGTGATGGTAGAATGCACAGAGTAAGCAAAGGAGCTCCTGAGCAGATTC TGCATCTTGCACATAATAAGTCAGAAATTGAACGAAGAGTGCATGCTGTGATCGACAAGTTTGCTGAGCGAGGCTTAAGGTCTCTTGCTGTTGCATACCA GGAAGTTCCTGAAGGCAGGAAAGAAAGCTCTGGAGGCCCATGGCAGTTCATTGGTCTCATGCCTCTTTTTGATCCACCCAGGCATGACAGTGCAGAGACT ATAAGGAGGGCTCTCAATCTTGGTGTCAATGTCAAGATGATTACAGGCGATCAGCTAGCAATAGGGAAGGAAACTGGGCGCCGTTTGGGAATGGGCACGA ACATGTACCCATCATCTGCATTGCTGGGACAAAATAAGGATGAATCTATTGCTTCTTTACCCGTCGATGACCTTATAGAAAAAGCTGATGGTTTCGCTGG CGTTTTTCCTGAGCACAAATATGAGATAGTCAAGCGCTTGCAAGCTATGAAGCACATATGTGGGATGACTGGTGATGGAGTTAATGATGCTCCTGCTCTC AAAAGGGCTGACATCGGAATTGCAGTTGCTGATGCCACCGATGCTGCTCGCAGCGCTTCTGATATTGTTCTAACTGAACCTGGTCTTAGTGTCATCATTA GCGCTGTCTTGACCAGTCGAGCAATCTTTCAGAGGATGAAAAATTACACAATCTATGCAGTCTCCATCACCATTCGTATAGTGCTTGGTTTCATGCTCCT GGCTCTGATATGGAAGTTTGATTTCCCACCTTTCATGGTTCTGATTATTGCCATTCTGAATGATGGTACGATTATGACCATATCAAAGGATAGGGTGAAA CCGTCTCCACTGCCCGACAGTTGGAAGCTGGCCGAGATATTTACAACTGGAGTTGTTCTTGGTAGTTACCTAGCGATGATGACTGTTATTTTCTTCTGGG CTGCATATAAAACTGACTTCTTCCCGAGGACATTTGGGGTTCCGACATTGGAGAAGACGGCACACGATGACTTCAGAAAGCTCGCCTCGGCAATTTACTT GCAAGTGAGCACCATCAGTCAAGCCCTCATCTTTGTAACGCGTTCCCGAAGCTGGTCCTATGCAGAACGTCCTGGTTTCTTGCTGGTTGTGGCTTTCATA ATTGCTCAGCTGATTGCTACACTGATAGCTGTTTACGCGAACTGGAGCTTTGCTGCGATAGAAGGGATAGGGTGGGGATGGGCTGGTGTGATTTGGCTCT ACAATATCATCTTCTACATCCCGTTGGACCCGATTAAGTTCCTCATCCGCTACGTGCTCAGCGGAAGGGCGTGGGATCTTGTCATTGAGCAAAGGGTTGC TTTCACAAGGCAAAAGGATTTCGGAAAGGAACAGCGCGAGCTTCAATGGGCACATGCGCAGAGAACACTGCACGGATTAGAAGTTCCAGACACCAAGATG TTTAACGAACGCACCCATTTCACGGAACTCAATCAGATGGCTGAAGAAGCAAAGAGGAGAGCTGAAATTGCAAGGTTGAGGGAGCTGCATACACTGAAGG GGCATGTGGAATCAGTGGTGAGATTGAAGGGCCTGGACATAGACACTATTCAACAGGCCTACACTGTCTGA
AA sequence Show only first row Show all	>Lus10003259 pacid=23182511 polypeptide=Lus10003259 locus=Lus10003259.g ID=Lus10003259.BGIv1.0 annot-version=v1.0 MGEKAEVLEGVLKETVDLENIPIEEVFENLRCSREGLTTQAAEDRLTIFGYNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDF VGIITLLLINSTISFIEENNAGNAAAALMASLAPKAKVLRDGRWSEQEASILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGI YSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIGVGMLIELIVMYPIQDRQYRPGIDNLLVLLIGGIPIAMPTVLSVT MAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFSKGIDADTVVLMAARASRTENQDAIDAAIVGMLADPKEARAGVQEIH FLPFNPTDKRTALTYLDGDGRMHRVSKGAPEQILHLAHNKSEIERRVHAVIDKFAERGLRSLAVAYQEVPEGRKESSGGPWQFIGLMPLFDPPRHDSAET IRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESIASLPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPAL KRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVK PSPLPDSWKLAEIFTTGVVLGSYLAMMTVIFFWAAYKTDFFPRTFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYAERPGFLLVVAFI IAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFLIRYVLSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLEVPDTKM FNERTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10003259 [exp]	0	1
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10028078 [exp]	2.2	0.8437
AT1G77690		LAX3	like AUX1 3 (.1)		Lus10025628 [exp]	3.5	0.8144
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	7.7	0.7742
AT1G62760			Plant invertase/pectin methyle...		Lus10004327 [exp]	12.8	0.7951
AT5G44005			unknown protein		Lus10008220 [exp]	16.9	0.7489
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	19.0	0.7535
AT1G30700			FAD-binding Berberine family p...		Lus10038439 [exp]	21.9	0.7364
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	23.2	0.7028
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10027927 [exp]	29.9	0.7096
					Lus10003607 [exp]	30.3	0.7206

Compare expression of checked genes

Lus10003259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.