Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04710 578 / 0 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G03430 86 / 5e-19 Ankyrin repeat family protein (.1) AT4G12400 87 / 4e-18 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G62740 83 / 8e-17 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G35230 81 / 5e-16 BSK1 BR-signaling kinase 1 (.1) AT1G12270 80 / 8e-16 Hop1 Hop1, stress-inducible protein, putative (.1) AT5G13530 78 / 5e-15 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT5G20350 78 / 5e-15 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G14255 77 / 5e-15 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G07270 77 / 5e-15 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006559 [exp] 879 / 0 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10028919 [exp] 84 / 7e-17 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10041189 [exp] 79 / 9e-16 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004336 [exp] 80 / 2e-15 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10032234 [exp] 75 / 4e-14 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10021905 [exp] 73 / 5e-14 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020505 [exp] 74 / 6e-14 AT2G14255 389 / 2e-131 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10024597 [exp] 74 / 6e-14 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10003329 [exp] 72 / 2e-13 AT4G35230 732 / 0.0 BR-signaling kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042300 [exp] 616 / 0 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G054800 [exp] 612 / 0 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G219201 [exp] 234 / 8e-73 AT3G04710 221 / 9e-68 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.010G161300 [exp] 88 / 1e-19 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.003G113400 [exp] 81 / 5e-16 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.001G029600 [exp] 80 / 1e-15 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.018G121200 [exp] 78 / 4e-15 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.004G182800 [exp] 77 / 5e-15 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.001G274900 [exp] 78 / 6e-15 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.009G142800 [exp] 77 / 7e-15 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10003260 pacid=23147846 polypeptide=Lus10003260 locus=Lus10003260.g ID=Lus10003260.BGIv1.0 annot-version=v1.0 ATGGCTCCTGATGTTTCCGAAGCCCTTATTGTTAGAGAGAAAGTTAAGAACTTTCTCAGTGCTTCTCTTACAGGGAACTTGGATCTTCTCAAGGCCTTTG CTGCCGAGCTCGACGAGGGTCAAGGAATGGCTAAAACTGTGGCCGGTATTAAGGACGCCAAGCAACGAGGGGCGCTTCATTTTGCTGCAAGAGAAGGAAA GACTGAAATCTGCAAGTTCTTGGTGGATGAGTTGAAGTTGGACGTTGACACTAAAGATGAAGATGGAGAAACACCTCTTCTCCATGCTGCTAGGCAAGGG CATAATGACACTGCTAAGTACCTCCTCGAGCGTGGTGCGAATCCCAGTATAGCGAGTGATATGGGGGTTACTGCCTTGCATCATTGTGCAGGGGAAGGAA ACATTGAATTGATGAAATACTTACTTTCAAAGGGTATGAAGGTTGACTTAGACAGTGATGCTGGGACGCCTTTAGTTTGGGCTGCTGGACATGATCAGAA AGATGCTTTGAAAGTTTTGTTAGAACAAAATGCTAATCCGAATGCTGAAACTGAAGATGGTGTAACTCCGTTGTTATCAGCCGTTGCTGCAAATTCATCA GAATGCACAGAGCTGTTGGTTCAGGCTGGGGCTTCTGCGAAGGTGATGGCTGGTGGCGCAACACCATTACACATTGCGGCAGACCATGGGAACATGGAAA TATTAAAATGTTTACTGGAAGCTGGCGCTGATCCTAACATCGCTGATGAGGATGGTCTTAAGGCAATACAGGTAGCAGCATCGAGAGGCAATCATGCAGC TGTTGAGATCCTTTTACCTAGGACGTCGAAAATTGAAACTATTCCCGAGTGGACTGTTGATGGGATCATCAGATATGTGCGATCCGAAACTGACAAGCAA GAGGAACGATCAAGGAACGCAACACAAGCCAATGGTTCACAGGATGCCGTGTTACCCAAGAAAGATCTTCCCGAGGTGTCTCCAGAAGCAAAAGCAAAAT CTGCAGAAGCGAAATCCAGAGGAGATGAAGCTTTCAGAAGGAAGGACTATCAAACTGCTGTTGATGCTTATAGCCAGGCGATTGATTTCGACCCAACCAA TGGAAACTTGTTCTCGAATCGAAGTCTTTGTTGGGTACTGTTGGGAGTAGGCGAGCACGCTTTGAGAGATGCAAGAGAATGCACAGCACTGAAGCCAGAC TGGCCGAAAGCTTGGTACCGGGAAGGAGCAGCTCTACGTTTGCTCAAGAGGTTTGAAGAAGCAGCGAATGCGTTTTTCAAGGGAGTGCAGCTTGACCCGG ATAGCATCGAACTTGGACAAGCCTTCAAGGAAGCCGTGGATGCTGGGAGGAAGTTTCACAGTAAGGAGAAGGGTAATTCATCGTGA
AA sequence Show only first row Show all	>Lus10003260 pacid=23147846 polypeptide=Lus10003260 locus=Lus10003260.g ID=Lus10003260.BGIv1.0 annot-version=v1.0 MAPDVSEALIVREKVKNFLSASLTGNLDLLKAFAAELDEGQGMAKTVAGIKDAKQRGALHFAAREGKTEICKFLVDELKLDVDTKDEDGETPLLHAARQG HNDTAKYLLERGANPSIASDMGVTALHHCAGEGNIELMKYLLSKGMKVDLDSDAGTPLVWAAGHDQKDALKVLLEQNANPNAETEDGVTPLLSAVAANSS ECTELLVQAGASAKVMAGGATPLHIAADHGNMEILKCLLEAGADPNIADEDGLKAIQVAASRGNHAAVEILLPRTSKIETIPEWTVDGIIRYVRSETDKQ EERSRNATQANGSQDAVLPKKDLPEVSPEAKAKSAEAKSRGDEAFRRKDYQTAVDAYSQAIDFDPTNGNLFSNRSLCWVLLGVGEHALRDARECTALKPD WPKAWYREGAALRLLKRFEEAANAFFKGVQLDPDSIELGQAFKEAVDAGRKFHSKEKGNSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10003260 [exp]	0	1
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	3.5	0.9327
AT5G62270			unknown protein		Lus10035022 [exp]	6.0	0.9101
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10030478 [exp]	10.8	0.9051
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Lus10038461 [exp]	11.0	0.8941
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	11.3	0.9172
AT5G19730			Pectin lyase-like superfamily ...		Lus10012942 [exp]	11.5	0.9114
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10001650 [exp]	11.6	0.8893
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	13.2	0.9125
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Lus10010915 [exp]	15.1	0.8760
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10022025 [exp]	15.5	0.9045

Compare expression of checked genes

Lus10003260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.