Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 270 / 4e-86 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 233 / 1e-71 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 93 / 5e-20 RING/U-box superfamily protein (.1) AT5G13250 50 / 2e-06 RING finger protein (.1) AT1G28080 47 / 2e-05 RING finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006558 [exp] 654 / 0 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 258 / 2e-81 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 254 / 7e-80 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10014749 [exp] 235 / 4e-72 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 218 / 9e-66 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10039845 [exp] 42 / 0.0007 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10018609 [exp] 42 / 0.001 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042000 [exp] 378 / 1e-127 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 348 / 5e-116 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 281 / 3e-90 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 265 / 1e-83 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 235 / 3e-72 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 171 / 2e-48 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 147 / 1e-40 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.004G137200 [exp] 49 / 3e-06 AT5G13250 92 / 9e-21 RING finger protein (.1) Potri.003G164800 [exp] 49 / 6e-06 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.001G062700 [exp] 48 / 8e-06 AT5G13250 202 / 2e-61 RING finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10003261 pacid=23147853 polypeptide=Lus10003261 locus=Lus10003261.g ID=Lus10003261.BGIv1.0 annot-version=v1.0 ATGGTGCTGGCCGGGAAGAAGCCGGTGGGGAAAGTGAAGAGGTCGACATTAGAGGCATGCATGACATGCCCTCTCTGCAATAAGCTCCTCCGTCAAGCTA CCACCATCTCCCTCTGCCTCCATACCTTCTGCAGAAAGTGCATATATGACCTGCTCTCGGATGAGGAAGTTGATACCTGTCCTGTATGCGATATTGACCT GGGTATTCTGCCAGTTGAGAAACTCAGGCCGGATCACAACTTGCAAGATATAAGGGCTAAAGTGTTTCCCTTGAAGAGTAAAAAAGTTGAGCCTGCTAAG GTTGTCACTTCCATTGCAGCACTGCCAGCAAAGAGAAAAGAGAGATCATTATCGTCTTTGGTGGTTAGCACTCCCAAAGTGCCTGAAGAAGCTAGTTTGA CTAGAAGGAAACCTAAGCCTAGTGCAAAGAAACTTGCTGGATTACGGGGTTGTGCATTTACAACAGAAGAATCCAACAAAGATGAGGATTCTTTTGCAGA AGATCATCCAATGAGCGAAAGCTCCCCTGAGTCTGAGAATAAAACTCCACAAATAGAAACGCAGGATTCTGCTGTTGCTGAGGCTTCCAATGAGGAACAA ACGAATGAAAAAGGGGGGGAAGATGGTGAAATAGTAGAAGGGAGAGCTGATCTGTGGACACCATTAAACTGTCTCGTCGAAGCTATTAACAGAACAAAGG CTTCTTCGAAGTCAAACTCTCTGGTGCAGCCTGTTGCCAAACCACTGGAGCTGTCAAGTGGCCCTAACTTTGGACCGAATTCCTTGGTGAAAATAGCAAG AGTAGAGTTTCCTGCTGGTAATGGCAGTGAAACATATATCGCCAAAAGCAAAAGCAAAGAACATAATCACAGAATCAATGTTCATGGCGAAGTGCAGGAC ATGAACGCAGATGCCCCGCCAGTTAAGCGTAGAAGGTTAACCGCTGCACGAAGAAGGGCAGCTTTGTCAGAAGAACTTAGTGCCTCAACACAAATCATAC TGGATGCTGCAATGAAAAATGGCAACAGAAGGGACCTTCCAGTTTGGAATAAAGATGCTTCGTTACCTCAGATTCCTACTTGTTACTTAAGGATCAAGGA TGGTAAAATGCCAGTGTCATTCATTCAGAAGTACCTAATCAAGAAACTTGACCTCAGCAATGAGGGTGAGGTAAGTAATGTATATGGAAGTGAACATTCC ATCGAGTTTAGCCTAATCAGACGAAGACTGACTGTGTTTCTCCGGATGCCGGTGACAGGTGGAGATAATGTGCAGGGGACAGCCGGTGGTTCCAACTCTA CAACTGCAGAACGTGGTGGACTTGTGGTTCCGAAATACGTCTTCGAAAGTGCCTGTGACCGTGGGGTCTTCTGCAAAGGACTTTGTGATGGTCTTGTCTT ACTGCCGGAAAGTTGA
AA sequence Show only first row Show all	>Lus10003261 pacid=23147853 polypeptide=Lus10003261 locus=Lus10003261.g ID=Lus10003261.BGIv1.0 annot-version=v1.0 MVLAGKKPVGKVKRSTLEACMTCPLCNKLLRQATTISLCLHTFCRKCIYDLLSDEEVDTCPVCDIDLGILPVEKLRPDHNLQDIRAKVFPLKSKKVEPAK VVTSIAALPAKRKERSLSSLVVSTPKVPEEASLTRRKPKPSAKKLAGLRGCAFTTEESNKDEDSFAEDHPMSESSPESENKTPQIETQDSAVAEASNEEQ TNEKGGEDGEIVEGRADLWTPLNCLVEAINRTKASSKSNSLVQPVAKPLELSSGPNFGPNSLVKIARVEFPAGNGSETYIAKSKSKEHNHRINVHGEVQD MNADAPPVKRRRLTAARRRAALSEELSASTQIILDAAMKNGNRRDLPVWNKDASLPQIPTCYLRIKDGKMPVSFIQKYLIKKLDLSNEGEVSNVYGSEHS IEFSLIRRRLTVFLRMPVTGGDNVQGTAGGSNSTTAERGGLVVPKYVFESACDRGVFCKGLCDGLVLLPES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10003261 [exp]	0	1
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	3.7	0.8083
AT1G08860		BON3	BONZAI 3, Calcium-dependent ph...		Lus10033826 [exp]	5.2	0.7865
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10018353 [exp]	5.7	0.7871
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	12.2	0.7708
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	12.8	0.7841
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10021013 [exp]	17.0	0.7078
AT3G09830			Protein kinase superfamily pro...		Lus10026523 [exp]	19.2	0.6965
AT4G36550			ARM repeat superfamily protein...		Lus10041754 [exp]	20.8	0.7715
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	23.6	0.7789
AT5G16110			unknown protein		Lus10009170 [exp]	24.5	0.7720

Compare expression of checked genes

Lus10003261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.