Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25610 266 / 7e-87 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 143 / 1e-40 ATUSPL1 unknown seed protein like 1 (.1) AT1G60390 128 / 8e-33 PG1 polygalacturonase 1 (.1) AT1G70370 126 / 3e-32 PG2 polygalacturonase 2 (.1.2) AT1G23760 124 / 3e-31 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022114 [exp] 391 / 3e-135 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007674 [exp] 387 / 5e-134 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10006555 [exp] 189 / 6e-61 AT5G25610 122 / 8e-35 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10026333 [exp] 179 / 7e-55 AT1G49320 187 / 9e-59 unknown seed protein like 1 (.1) Lus10007011 [exp] 176 / 8e-53 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10006554 [exp] 163 / 7e-50 ND 45 / 8e-07 Lus10032324 [exp] 165 / 6e-49 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10006665 [exp] 165 / 4e-48 AT1G49320 177 / 3e-53 unknown seed protein like 1 (.1) Lus10006667 [exp] 162 / 1e-47 AT1G49320 196 / 4e-61 unknown seed protein like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243700 [exp] 328 / 2e-111 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 327 / 1e-110 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.018G036700 [exp] 323 / 7e-109 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 231 / 9e-74 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 228 / 8e-73 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 226 / 3e-72 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 224 / 3e-71 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.009G114300 [exp] 169 / 3e-50 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.004G153100 [exp] 166 / 4e-49 AT1G49320 240 / 2e-78 unknown seed protein like 1 (.1) Potri.009G114600 [exp] 165 / 7e-49 AT1G49320 220 / 5e-71 unknown seed protein like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [flax] [poplar] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Lus10003263 pacid=23147843 polypeptide=Lus10003263 locus=Lus10003263.g ID=Lus10003263.BGIv1.0 annot-version=v1.0 ATGAAGTTCAATCCTCTCGATGTTGTTGGATTAATTCTCACTATCTCCCTTGCCGCTACTCATGCTGCCACTAGTACTCCTGCACTCTACTGGAAAGCAG TCCTCCCAAACACGCCCATGCCAAAAGCTGTCAGTGATCTTTTGCAGCCAGACTTGTTGGAAGACAATAGCACAACCGTTGGTATCCCAGCTAGGAAGCC CGGGGCTCGAACAAATGTTGGAGTATCAAAGGCACCCCACGCAGAGATCCCAGCGAAGCGCCTCTTCGTAGTCTACACCGATGCTGCCACTCAGGAACAA CTAAACGACGACACTAATGCAGAAATCTTCTTCCTGGAGAAAGATATGCACCCTGGCAAAGCCATCAACTTGGATTTCACCGAGTCCACCCCACAAATTA GAGCAACCTTTTTACTTCGACAAGTCGCGGACTCGATACCATTCTCCTCCGAAAAGTTGCCCGAGATCTTCAACGAATTCGAGGTAAACCCCAAATCTTA CGAGGGCGAGACGATGAAGAACACTATGGAGGAATGTGAAACCCCCGCGATACAGGGAGAGGATAAACTCTGTGCCACTTCGCTAGAGTCGATGGTCGAC TTCAGCACCTCGAAACTCGGAAGGAACGTCCTCGCAATCTCGACAGAAGTAGCGAAGAAGAAGCAAGCTCGGCGTCAGGAATATAGGATCAATGGAGTGA TAGTTAAGATGAGAGGCTCGAGAACTGTGGTGTGCCATGACGAGAAGTATGCATCCGCTGTGTTTTACTGCCACGCAGCACAGACGTTAAAGGCGTACTT GGTTCCTCTGGAAGGTGCCGATGGAACAAAGGTTAATGCAGTAGCGGTATGTCATACCGATACAACCCAGTGGAACCCAAAGCATTTGGCTTTTCAGTTG CTCAAGGTTAAACCGGGAACCGATCCGATCTGCCATTTCCTTCCTCAGGATCATATTGTCTGGGTGCCCAACAACTAG
AA sequence Show only first row Show all	>Lus10003263 pacid=23147843 polypeptide=Lus10003263 locus=Lus10003263.g ID=Lus10003263.BGIv1.0 annot-version=v1.0 MKFNPLDVVGLILTISLAATHAATSTPALYWKAVLPNTPMPKAVSDLLQPDLLEDNSTTVGIPARKPGARTNVGVSKAPHAEIPAKRLFVVYTDAATQEQ LNDDTNAEIFFLEKDMHPGKAINLDFTESTPQIRATFLLRQVADSIPFSSEKLPEIFNEFEVNPKSYEGETMKNTMEECETPAIQGEDKLCATSLESMVD FSTSKLGRNVLAISTEVAKKKQARRQEYRINGVIVKMRGSRTVVCHDEKYASAVFYCHAAQTLKAYLVPLEGADGTKVNAVAVCHTDTTQWNPKHLAFQL LKVKPGTDPICHFLPQDHIVWVPNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10003263 [exp]	0	1
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	1.4	0.7228
AT5G05390		LAC12	laccase 12 (.1)		Lus10040957 [exp]	11.2	0.6733
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10025032 [exp]	19.5	0.6889
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10023346 [exp]	22.9	0.6840
AT5G10750			Protein of unknown function (D...		Lus10020102 [exp]	25.2	0.6621
AT1G70740			Protein kinase superfamily pro...		Lus10003711 [exp]	25.5	0.6697
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10016187 [exp]	26.2	0.6873
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010833 [exp]	27.2	0.6715
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	28.0	0.6717
AT1G48320			Thioesterase superfamily prote...		Lus10036869 [exp]	45.3	0.6716

Compare expression of checked genes

Lus10003263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.