Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04720 201 / 5e-66 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006557 [exp] 218 / 2e-73 AT3G04720 191 / 2e-62 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006552 [exp] 212 / 1e-70 AT3G04720 244 / 1e-82 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003264 [exp] 197 / 1e-65 AT3G04720 181 / 1e-58 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006556 [exp] 192 / 1e-63 AT3G04720 186 / 1e-60 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003262 [exp] 175 / 3e-57 AT3G04720 154 / 2e-48 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020252 [exp] 138 / 8e-42 AT3G04720 135 / 4e-40 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10001774 [exp] 135 / 8e-41 AT3G04720 125 / 2e-36 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003588 [exp] 123 / 3e-36 AT3G04720 128 / 1e-37 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006553 [exp] 111 / 4e-32 AT3G04720 81 / 2e-20 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G054000 [exp] 217 / 7e-73 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041900 [exp] 216 / 3e-72 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041700 [exp] 212 / 7e-71 AT3G04720 248 / 4e-84 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041600 [exp] 207 / 9e-69 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10003265 pacid=23147836 polypeptide=Lus10003265 locus=Lus10003265.g ID=Lus10003265.BGIv1.0 annot-version=v1.0 ATGGCTGGACACGTACGTTCTTCTTCCCACTATAAATTCATAACACCAAACCTTCTCCAAATCACATCAGAACTTACAAGTATGGAGAGATTGAGTGCAG CTCTGTTATTTGCTCTGCTACTCAGTGTGTTCGCTGCGATCGCCAGTGGCCAGAGTGCTTCGAATGTGAGGTCTACGTACCATTTGTACAACCCTCAACA GAACGGATGGAACTTGAACGCCGTTAGTGCTTATTGCTCCACTTGGGATGCCAACAAGCCCTTGGCCTGGCGCCAGAAGTACGGCTGGACAGCCTTCTGC GGTCCCTCTGGACCCCGTGGCCAAGCTGCTTGCGGCCGCTGCTTGAAGGTGACGAACAGAGCGACAAGGGCGGAAGCGACGGTGAGAATTGTCGATCAAT GTAGCAACGGAGGGTTAGATCTGGACGTCAATGTTTTCAGGAAGATTGATACCGATGGAAGAGGAAATGCTCAAGGCCATCTCATGGTTGACTATACATT CGTCAATTGTTGA
AA sequence Show only first row Show all	>Lus10003265 pacid=23147836 polypeptide=Lus10003265 locus=Lus10003265.g ID=Lus10003265.BGIv1.0 annot-version=v1.0 MAGHVRSSSHYKFITPNLLQITSELTSMERLSAALLFALLLSVFAAIASGQSASNVRSTYHLYNPQQNGWNLNAVSAYCSTWDANKPLAWRQKYGWTAFC GPSGPRGQAACGRCLKVTNRATRAEATVRIVDQCSNGGLDLDVNVFRKIDTDGRGNAQGHLMVDYTFVNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003265 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10007035 [exp]	10.0	0.7968
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	13.0	0.8025
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10016884 [exp]	14.8	0.8488
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	18.7	0.8239
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10002314 [exp]	26.9	0.7964
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	29.5	0.8208
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	44.3	0.8068
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	46.1	0.8041
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Lus10040274 [exp]	46.9	0.7978
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10031767 [exp]	47.4	0.8042

Compare expression of checked genes

Lus10003265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.