Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39130 250 / 1e-84 RmlC-like cupins superfamily protein (.1) AT5G39190 250 / 2e-84 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39160 249 / 4e-84 RmlC-like cupins superfamily protein (.1.2.3) AT5G38910 239 / 3e-80 RmlC-like cupins superfamily protein (.1) AT5G38940 238 / 8e-80 RmlC-like cupins superfamily protein (.1) AT5G38960 238 / 1e-79 RmlC-like cupins superfamily protein (.1) AT5G39150 234 / 2e-78 RmlC-like cupins superfamily protein (.1) AT5G39120 234 / 3e-78 RmlC-like cupins superfamily protein (.1) AT5G39110 234 / 4e-78 RmlC-like cupins superfamily protein (.1) AT3G05950 233 / 1e-77 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003116 [exp] 266 / 7e-91 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006538 [exp] 266 / 1e-90 AT5G39120 313 / 3e-109 RmlC-like cupins superfamily protein (.1) Lus10000622 [exp] 262 / 6e-89 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10006536 [exp] 261 / 1e-88 AT5G39150 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Lus10033767 [exp] 258 / 1e-87 AT5G39150 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Lus10003114 [exp] 258 / 2e-87 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006543 [exp] 258 / 2e-87 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10032016 [exp] 233 / 2e-77 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035185 [exp] 232 / 2e-77 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179844 [exp] 277 / 5e-95 AT5G39130 274 / 6e-94 RmlC-like cupins superfamily protein (.1) Potri.004G179833 [exp] 277 / 5e-95 AT5G39130 274 / 6e-94 RmlC-like cupins superfamily protein (.1) Potri.004G179888 [exp] 277 / 5e-95 AT5G39130 274 / 6e-94 RmlC-like cupins superfamily protein (.1) Potri.004G179855 [exp] 277 / 5e-95 AT5G39130 274 / 6e-94 RmlC-like cupins superfamily protein (.1) Potri.004G180100 [exp] 278 / 8e-95 AT5G39130 275 / 1e-93 RmlC-like cupins superfamily protein (.1) Potri.004G179800 [exp] 278 / 1e-94 AT5G39130 275 / 1e-93 RmlC-like cupins superfamily protein (.1) Potri.004G179811 [exp] 278 / 1e-94 AT5G39130 275 / 1e-93 RmlC-like cupins superfamily protein (.1) Potri.004G179900 [exp] 278 / 1e-94 AT5G39130 275 / 1e-93 RmlC-like cupins superfamily protein (.1) Potri.009G140350 [exp] 275 / 5e-94 AT5G39110 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Potri.009G140400 [exp] 272 / 3e-93 AT5G39110 247 / 3e-83 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10003267 pacid=23147848 polypeptide=Lus10003267 locus=Lus10003267.g ID=Lus10003267.BGIv1.0 annot-version=v1.0 ATGGCAGTTGGGAGTTTCCAATTGGTAGTTTCATTGCTGGCTTTGGCCTCTACATTGGCTGTGGCTTATGATCCTTCAATCCTTCAGGATTTCTGCGTAG CTGTCAAGGACCAAACTTCCCCTGATGCAGTATTCGTGAACGGGAAAGTATGCAAGAACCCATCGTCGGCAACCATAGACGACTTCACTTTCTCAGGGCT CAACGTCCCACGTGACACTCGCAACAACATTGGAGGCAAGATAACGGTTGTGGACTCGACCGTTATCCCCGGGATGAACACCTTGGGGATCAACTTGGTT CGGATCGACCTGGCTGCCAACGGAGGGTTGAACCCGCCCCACGAGCACCCTCGTGCTTCGGAGGTCCTGTACGTGGCGGAGGGAACCCTCTACGCAGGAT TCGTGACCACTAACCCTGAACGCCGCCTTTTTGCCAAAGTTTTGCATCCCGGAGATGTCATAGTTTTCCCCGTGGGGATGATTCATTTCCAGTACAACGT CGGAAAGACTCCTGCTTTGGCCTTTGCGGCGCTGGGGAGCCAGAACCCTGGCATCATGACAATCGGGAATTCGATGTTCGGAGCCAATCCCCCGATTGAT GTGGCAATGTTGGCTAAGGCGTTTCAGATTGATGAGAAGGTTGTGAAGGAGCTTCAGAAGAAGACATGGGTTAATCCTGAAGAGTAA
AA sequence Show only first row Show all	>Lus10003267 pacid=23147848 polypeptide=Lus10003267 locus=Lus10003267.g ID=Lus10003267.BGIv1.0 annot-version=v1.0 MAVGSFQLVVSLLALASTLAVAYDPSILQDFCVAVKDQTSPDAVFVNGKVCKNPSSATIDDFTFSGLNVPRDTRNNIGGKITVVDSTVIPGMNTLGINLV RIDLAANGGLNPPHEHPRASEVLYVAEGTLYAGFVTTNPERRLFAKVLHPGDVIVFPVGMIHFQYNVGKTPALAFAALGSQNPGIMTIGNSMFGANPPID VAMLAKAFQIDEKVVKELQKKTWVNPEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	0	1
					Lus10039965 [exp]	6.6	0.9248
AT5G01880			RING/U-box superfamily protein...		Lus10025144 [exp]	8.6	0.8077
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	8.9	0.9077
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	10.5	0.9205
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	11.6	0.8909
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10027722 [exp]	12.2	0.7878
AT3G63170			Chalcone-flavanone isomerase f...		Lus10032083 [exp]	13.0	0.9109
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10032129 [exp]	15.4	0.9097
AT5G21280			hydroxyproline-rich glycoprote...		Lus10009801 [exp]	16.2	0.8314
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10033879 [exp]	17.2	0.9097

Compare expression of checked genes

Lus10003267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.