Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08020 281 / 6e-89 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 279 / 8e-88 ATRPA70D Replication factor-A protein 1-related (.1) AT2G06510 126 / 1e-31 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT5G45400 120 / 2e-29 ATRPA70C Replication factor-A protein 1-related (.1) AT4G19130 114 / 3e-27 Replication factor-A protein 1-related (.1) AT5G36930 64 / 1e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 61 / 1e-09 transmembrane receptors;ATP binding (.1.2) AT1G72890 56 / 3e-08 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT5G45240 54 / 2e-07 Disease resistance protein (TIR-NBS-LRR class) (.1) AT1G17615 53 / 2e-07 Disease resistance protein (TIR-NBS class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006548 [exp] 415 / 6e-141 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10040517 [exp] 360 / 4e-119 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10021153 [exp] 359 / 2e-115 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10026011 [exp] 147 / 5e-38 AT1G27170 423 / 5e-127 transmembrane receptors;ATP binding (.1.2) Lus10001040 [exp] 134 / 8e-37 AT5G36930 167 / 2e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10034737 [exp] 139 / 5e-36 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10008027 [exp] 131 / 7e-35 AT5G36930 197 / 5e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 130 / 1e-32 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 130 / 1e-32 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057300 [exp] 325 / 1e-105 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.003G102700 [exp] 120 / 2e-29 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.018G065300 [exp] 115 / 2e-27 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.T002300 [exp] 80 / 8e-16 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 78 / 2e-15 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 78 / 3e-15 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 77 / 1e-14 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 76 / 1e-14 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 75 / 3e-14 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 74 / 5e-14 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10003268 pacid=23147850 polypeptide=Lus10003268 locus=Lus10003268.g ID=Lus10003268.BGIv1.0 annot-version=v1.0 ATGGCGGTGTGCTGGAAGCAAGGGAAAGGTCATATCATATTGCCCATTTTCTATTTTGTGAATCCCAAAGATGTTAGGCACCAAGAGAGCCCTTACAAAG AAGCCTTTGAAATGCACAGCAAGAAACATGATGCAGATATGGTTAAGGAATGGAGGGAAGCTCTCGAGGAAGTTGGGAAAATGAAGGGATGGACAGTGGA AGACTCCATTGGACAGGATGCTGTAATAGATAAAGTTTTCTCAAGAGTGGACTCACTTCTGATGATGAACTACAAGTTGGGCATGGCTCCTACAGCTCGA ATGGCGATGACTCGCAGGGTTCACCCTCTAGTATCTCTGAATCCTTACCTAGGGAACTGGACCATCAAGGTTAGGGTTACAAGCAAAGGGAACATCCGCA CCTATAAGAACATGAGAGGTGAAGGATGCCTTTTCAATGTTGAGTTAACAGATGAAGATGGTACTCAAATACAAGCAACAATGTTCAACGAAGCTGCAAA GAAATTCTATGAGAGGTTCAAGCTTGGAAAAGTTTATTACATTTCGAAGGGATCTCTTAGAGTTGCTAACAAGCAGTATCTGACGGTTCCTATTCCAAAG CGTGATATTGTCATTGGAGATGAAAGTAAGAAGACTGTAGTTGTTTCTTTGTGGAGTGAGCTTGCGACTGGTTCTGGCCAGGAATTACTCGATATTGCTG ATAAGAAACCTGTTGTTGCTATTAAAGCTCTGAGAGTTGGAGACTTTCAAGGCGTAACTTTGTCCACAGTGGGAAAAAGCATGTTGCAGGTCAACCCTGA CATTCCAGAATCAAAGAAACTGAGATCATGGTATGATTCTGATGGCAAAGACAGTTCTATGGCCCCTATTGGTTCTGGAATGAGCCCTTCAATCAAGAGC GGGCTGTGGTACCGAGCTTGCAAGACTTGCCATAAGAAAGTGACTGATGCCATTGGTGGTGGATACTGGTGCGAAGGATGCCAGAAGAATGAGTCCGAAT GTAGCTTAAGGTACATATTGGTTGTCAAAGTCTGTGATAAAAGCGGAGAAGGATGGATTTCTTCCTTCACTGAAGAAGCAGAGCAGATTCTTGGTTGCAT TGCTGATGAACTTGGTCAACTGAAATCACAGGATGACGGGAGTGCATACTTGGCAAAGCTGAAAGCAGCGACATGGAATCAGTACTTGTTCAGGGTGAGT GTTACTCAGAATGAGTACAACAATGATAAGAGGTAG
AA sequence Show only first row Show all	>Lus10003268 pacid=23147850 polypeptide=Lus10003268 locus=Lus10003268.g ID=Lus10003268.BGIv1.0 annot-version=v1.0 MAVCWKQGKGHIILPIFYFVNPKDVRHQESPYKEAFEMHSKKHDADMVKEWREALEEVGKMKGWTVEDSIGQDAVIDKVFSRVDSLLMMNYKLGMAPTAR MAMTRRVHPLVSLNPYLGNWTIKVRVTSKGNIRTYKNMRGEGCLFNVELTDEDGTQIQATMFNEAAKKFYERFKLGKVYYISKGSLRVANKQYLTVPIPK RDIVIGDESKKTVVVSLWSELATGSGQELLDIADKKPVVAIKALRVGDFQGVTLSTVGKSMLQVNPDIPESKKLRSWYDSDGKDSSMAPIGSGMSPSIKS GLWYRACKTCHKKVTDAIGGGYWCEGCQKNESECSLRYILVVKVCDKSGEGWISSFTEEAEQILGCIADELGQLKSQDDGSAYLAKLKAATWNQYLFRVS VTQNEYNNDKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	0	1
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	2.0	0.9371
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	3.7	0.9316
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	4.5	0.9125
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	5.2	0.9134
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10000155 [exp]	6.7	0.8451
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10036085 [exp]	6.9	0.8633
AT5G47380			Protein of unknown function, D...		Lus10004732 [exp]	10.4	0.8909
					Lus10038266 [exp]	13.4	0.8784
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	14.1	0.8943
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	14.4	0.8916

Compare expression of checked genes

Lus10003268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.