Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18280 560 / 0 ATAPY2 apyrase 2 (.1.2) AT3G04080 541 / 0 ATAPY1 apyrase 1 (.1) AT1G14240 135 / 3e-35 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT2G02970 132 / 1e-33 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14250 124 / 5e-31 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 123 / 8e-31 GDA1/CD39 nucleoside phosphatase family protein (.1) AT4G19180 76 / 1e-14 GDA1/CD39 nucleoside phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006546 [exp] 682 / 0 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10042528 [exp] 660 / 0 AT5G18280 684 / 0.0 apyrase 2 (.1.2) Lus10030470 [exp] 129 / 2e-32 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10012825 [exp] 120 / 2e-29 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10021989 [exp] 119 / 1e-28 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039953 [exp] 103 / 6e-24 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10027686 [exp] 97 / 1e-21 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 71 / 7e-13 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 70 / 1e-12 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053500 [exp] 568 / 0 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031000 [exp] 560 / 0 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.019G031200 [exp] 427 / 8e-148 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.013G053700 [exp] 265 / 1e-86 AT5G18280 300 / 2e-98 apyrase 2 (.1.2) Potri.008G086400 [exp] 129 / 2e-32 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.010G169100 [exp] 123 / 1e-30 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 100 / 2e-22 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.015G079900 [exp] 81 / 3e-16 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G236900 [exp] 79 / 1e-15 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G195600 [exp] 59 / 4e-09 AT5G21140 325 / 2e-108 embryo defective 1379 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Lus10003270 pacid=23147840 polypeptide=Lus10003270 locus=Lus10003270.g ID=Lus10003270.BGIv1.0 annot-version=v1.0 ATGCTGGGAGTTCCGGGAGTAGAGTCCATGTCTTCTGTTTTGACTCGAGGATGGATCTCATTCCGATTGGCAAAGATCTTGAGCTTTTTGAGCAGGCATT GCACTTCATCATTCATCGATTTGCTTTCAGAATTCCGATTCGATTGCAATCTTAAGCCTGGGTTGAGCTTCTATGCGAAGGACCCGCGGGCGGCAGCTGA GTCGCTCATTTCTCTACTCGACAAGGCAGAAGCTGCTGTGCCGAAGCAATTGCGGCCAAAGACTCCGGTTAGAGTTGGGGCAACTGCAGGTTTGAGAACT TTGGAAGGCGATGCATCTGATCGGATTTTGCAATCGGTTAGGGATCTTCTGAAAGATCGAAGTACCTTCAAATCTGATGCGAACTCAGTCACTGTCTTGG ATGGTTCTCAAGAAGGTTCTTATCAATGGGTCACCATAAATTATCTCTTGGGTAAGTTGGGGAGGTCATATGCCAGTACAGTTGGGGTAGTTGATCTTGG TGGTGGGTCTGTCCAAATGGCATATGCAATATCTGAGGCAGATGCAGCGAAATCTCCAAGGGTGACAAGTGGAGAGGATACCTATGTACATAAAATGTTA CTGAAGGGAGTAACATATTACCTCTATGTTCACAGCTATTTGCATTACGGGTTATTGGCCGCTAGAGCCGAGATTTTGAAGGTTTCTGAAGGATCTTCAA ATCCATGTCTTTTGGCTGGTTATGATGGTACTTATAAGTATGGTGGAGAGAAATTCAAGGCATCTGCATCTCCTAGAGGTTCTAACTTGGAGGAATGCAG GAGGGTAGCTACTAGAGCACTGAGAATAAACGAGACAACATGCGATCATATGAAATGCACCTTCGGCGGAATATGGAACGGTGGTGGTGGAGATGGTCAA AAGAACCTATTCGTTGCTTCGTTTTTCTTTGATAGAGCTGCTGAGGCAGGTTTCATCAACTCCAAATTACCTGTTGCTAAAGTTCGTCCTTCTGATTTCG AGGAGGCAGCTCGGCGTGCTTGCGAAACCAAGCTCGAGTCTGGGAAGTCTACTTACCCAGACGTGGAAGAGGGTAACCTTCCATATCTTTGCATGGACCT TGTCTACCAATACACATTGCTGGTGGATGGATTTGGTCTCAGTCCGTGGCAAGACATCACACTGGTGAAGAAGGTTAAATACGGAGACTCTCTTGTTGAA GCAGCATGGCCATTAGGTAGCGCCATCGAAGCTGTCTCAGCGTTATGA
AA sequence Show only first row Show all	>Lus10003270 pacid=23147840 polypeptide=Lus10003270 locus=Lus10003270.g ID=Lus10003270.BGIv1.0 annot-version=v1.0 MLGVPGVESMSSVLTRGWISFRLAKILSFLSRHCTSSFIDLLSEFRFDCNLKPGLSFYAKDPRAAAESLISLLDKAEAAVPKQLRPKTPVRVGATAGLRT LEGDASDRILQSVRDLLKDRSTFKSDANSVTVLDGSQEGSYQWVTINYLLGKLGRSYASTVGVVDLGGGSVQMAYAISEADAAKSPRVTSGEDTYVHKML LKGVTYYLYVHSYLHYGLLAARAEILKVSEGSSNPCLLAGYDGTYKYGGEKFKASASPRGSNLEECRRVATRALRINETTCDHMKCTFGGIWNGGGGDGQ KNLFVASFFFDRAAEAGFINSKLPVAKVRPSDFEEAARRACETKLESGKSTYPDVEEGNLPYLCMDLVYQYTLLVDGFGLSPWQDITLVKKVKYGDSLVE AAWPLGSAIEAVSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10003270 [exp]	0	1
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	1.4	0.9420
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	2.0	0.9408
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10025800 [exp]	3.2	0.9374
AT4G37820			unknown protein		Lus10011571 [exp]	3.5	0.9215
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	4.2	0.9408
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Lus10002209 [exp]	4.2	0.9317
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	6.2	0.9209
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	8.4	0.9224
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	8.6	0.9008
AT5G45370			nodulin MtN21 /EamA-like trans...		Lus10037284 [exp]	8.8	0.9286

Compare expression of checked genes

Lus10003270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.