Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64250 414 / 7e-146 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006545 [exp] 342 / 1e-118 AT5G64250 293 / 7e-100 Aldolase-type TIM barrel family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G051800 [exp] 451 / 2e-160 AT5G64250 510 / 0.0 Aldolase-type TIM barrel family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF03060 [flax] [poplar] NMO Nitronate monooxygenase
Representative CDS sequence Show only first row Show all	>Lus10003271 pacid=23147839 polypeptide=Lus10003271 locus=Lus10003271.g ID=Lus10003271.BGIv1.0 annot-version=v1.0 ATGGGGTGGAGAGGAATACTGGGATTCGACTCCGGGATTGTTCAGGCACCACTGGGTCCCGATATCTCCGGCCCGGAGCTCGTCGCCGCCGTCGCCAATG CCGGCGGTCTCGGCCTTCTCCGAGCTCCCGACTGGGAAGATCCGGATTATGTGAGGGAATTGATCAAGAAAACTAGAAGCTTGACGAACAAGCCATTCGG AATAGGAATAGTGCTAGCCTTCCCCCACGAAGAGAACTTGAAGGCAATACTAGACGAGAAAGTAAAGGTTCTGCAAGTTTACTGGGGGGAATGCTCAAAG GAACTTGTTGACAAAGCGCATGCCTTTGGGGTAATGGTAATCCCTCAAGTTGGCACCGTGGAATCTGCAAAGAAAGCTGCTGAATCGGGCGTTGATGCGA TCATTGTCCAAGGCCGCGAAGCTGGAGGCCATGTCATCGGTCAGGAAGGGCTGATGTCACTAGTGCCAAGGGTGGTGGATGCTGTTGGTGGGATTATACC AGTAATTGCAGCTGGTGGAATTGTGGACGCTCGTGGCTATGTTGCTACTCTGGCTCTTGGTGCTCAAGGTGTGTGTTTAGGGACTAGGTTTGTTGCGACG CAGGAGAGCAATGCTCATCCGATATACAAGAGGAAATTGGTGGAGCTTGACGAGACGGAGTATACGGACGTGTTTGGGAGAGCTCGGTGGCCAAATGCGC CACAACGTGCGTTGGTAACGAGTTTTATGAACCGGAATGGGAAGTTGCTGCCGAGGAATGACACTGAGCTTGATCATCCTGTCATTGGCAAGTCTGTCAT TCACGGCCAGGAGAAAGAGATACGTATGTTTGGCGGGGCTGTACCGAATGCAGCAGCGACGGGTGAGATTGAGAGCATGGCGATGTATGCAGGTCAAGGA GTTGGTATGATTAAGGACATTCCTGCTGCTGCTCAAGTTGTTGATAGCCTTGTTCATGGAGCTCAGCAGCTCATTCTCCAACAATTTTCTGCTTAA
AA sequence Show only first row Show all	>Lus10003271 pacid=23147839 polypeptide=Lus10003271 locus=Lus10003271.g ID=Lus10003271.BGIv1.0 annot-version=v1.0 MGWRGILGFDSGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWEDPDYVRELIKKTRSLTNKPFGIGIVLAFPHEENLKAILDEKVKVLQVYWGECSK ELVDKAHAFGVMVIPQVGTVESAKKAAESGVDAIIVQGREAGGHVIGQEGLMSLVPRVVDAVGGIIPVIAAGGIVDARGYVATLALGAQGVCLGTRFVAT QESNAHPIYKRKLVELDETEYTDVFGRARWPNAPQRALVTSFMNRNGKLLPRNDTELDHPVIGKSVIHGQEKEIRMFGGAVPNAAATGEIESMAMYAGQG VGMIKDIPAAAQVVDSLVHGAQQLILQQFSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	0	1
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039745 [exp]	1.0	0.9829
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040761 [exp]	1.7	0.9766
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	2.0	0.9786
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	4.5	0.9751
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	6.3	0.9741
AT5G12340			unknown protein		Lus10036031 [exp]	7.7	0.9604
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	8.1	0.9738
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	9.2	0.9619
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	10.0	0.9660
AT5G36930			Disease resistance protein (TI...		Lus10014671 [exp]	11.8	0.9655

Compare expression of checked genes

Lus10003271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.