Plant FIBer expression Database

Lus10003272 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012087
[exp]
274 / 6e-94 AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10015702
[exp]
252 / 3e-86 ND 38 / 0.004
Lus10010402
[exp]
249 / 2e-85 ND /
Lus10032804
[exp]
240 / 1e-81 ND /
Lus10008255
[exp]
212 / 7e-67 AT1G48120 49 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1)
Lus10000686
[exp]
196 / 3e-64 AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10007197
[exp]
174 / 1e-56 ND /
Lus10017181
[exp]
171 / 5e-55 ND /
Lus10034059
[exp]
157 / 9e-50 AT1G48120 43 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10536 PMD Plant mobile domain
Representative CDS sequence
>Lus10003272 pacid=23147835 polypeptide=Lus10003272 locus=Lus10003272.g ID=Lus10003272.BGIv1.0 annot-version=v1.0
ATGCTTAGACAGGAGCGTAGGGCAGGAGAGGCTTTAGCTAGTAGGTGGGACAGTGCAGAGACACCTACTCGGGGTGACGGGTTCCTACGAGAGAGGTTGG
ACTACTATCGTCGCCTCCTCGATAACATGGATTCCTGTGATGTGAGTTGGCTTCCTTTTGGGCCGCATCCTGACCGTGAGGTCCCGGCCACGACTTACCG
TGTTCTCCTCCGTTGCGACGACGTAGGGGAGTTCTACGATTCTTATCTTGTGCTCCGACAGTTTGGCTACACACAGGTCGTCCCCCCCTCGATTCCTGTG
CCGCTGCGGGCCATTAGGCTCAAATCTATCCAGACCTATGGGGTCCAGTGGGCCCCGGCTGATGATAGGACTTGGTTGGAGCAGGAATTCATCAGATTTC
ACCGGCTACACCTTATGTTCGAGAGGGCATCGGCTGGTGCGGATGTTGGTCCAGAGTACATGAACTGGTTCCTCGAGCACAGTCACCCACGCATCGTGAC
GCCGGCTAACCCCGGTGTGGGAGTCCCAGCTGAGCTGGTAAGTTCGATTCCTAATTCACATTTGAGCGGTTTATAA
AA sequence
>Lus10003272 pacid=23147835 polypeptide=Lus10003272 locus=Lus10003272.g ID=Lus10003272.BGIv1.0 annot-version=v1.0
MLRQERRAGEALASRWDSAETPTRGDGFLRERLDYYRRLLDNMDSCDVSWLPFGPHPDREVPATTYRVLLRCDDVGEFYDSYLVLRQFGYTQVVPPSIPV
PLRAIRLKSIQTYGVQWAPADDRTWLEQEFIRFHRLHLMFERASAGADVGPEYMNWFLEHSHPRIVTPANPGVGVPAELVSSIPNSHLSGL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10003272
[exp]
0 1
AT2G22180 hydroxyproline-rich glycoprote... Lus10000688
[exp]
1.0 1.0000
Lus10000824
[exp]
1.4 1.0000
AT2G33470 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFE... Lus10003626
[exp]
1.7 1.0000
Lus10011629
[exp]
2.2 1.0000
AT5G26150 protein kinase family protein ... Lus10024998
[exp]
2.8 1.0000
AT1G11040 HSP40/DnaJ peptide-binding pro... Lus10025682
[exp]
3.0 1.0000
Lus10029832
[exp]
3.3 1.0000
Lus10010826
[exp]
3.5 1.0000
AT5G09280 Pectin lyase-like superfamily ... Lus10031867
[exp]
3.6 1.0000
Lus10033178
[exp]
3.7 1.0000

Lus10003272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.