Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12360 43 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006544 [exp] 369 / 8e-123 AT3G59110 205 / 1e-57 Protein kinase superfamily protein (.1) Lus10038810 [exp] 250 / 9e-84 AT5G12360 43 / 5e-05 unknown protein Lus10039048 [exp] 245 / 7e-82 AT5G12360 42 / 1e-04 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G113501 [exp] 102 / 7e-27 ND / Potri.004G101600 [exp] 92 / 6e-23 ND / Potri.009G072000 [exp] 52 / 4e-08 AT3G14190 105 / 2e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003273 pacid=23147842 polypeptide=Lus10003273 locus=Lus10003273.g ID=Lus10003273.BGIv1.0 annot-version=v1.0 ATGGCGTCAACAGTCCGTCAGGACCGTATTCTAAAAAACGTTTGGGTGAAGCCCGATGCCTCAAAATCATCGAAGAAGGGTTTAGGGTTAGCTGGTAGGA AACCGCTGGGGGATTTGTCCAACGCTGTAAAGAATCAGTCGTCTTCTGCTTCTCTGAACCAAACCTCCAAGAAGGCTTCTGTTAGTGTTGGGGGTAAAGC TTCTAGGAATCGCAAGGTTCTTTCTGACATCTCGAATTCGGCCAAGTTACAGAAGGAGACTACGTCTAAGAAGACTCTGGTTAAGGAATGTCTGAGTGTT GTGTGTGAGGAGCAGCCACTGGCTGGAGAGTGTGGGATTGCCGAAGAAGGATTCCTGCACAATCATGACGAGTGCATCAAAGCTCAGACTCAAGCGATGG ATGTGGATGAGTTCATGAAGATTATTTCGATGGAGAATGATTGTTCTACGAAGTTCGGATCTCCAAGGGTAGTTGCGACGCCTACCCGTTTCGATCCTGA GAGTCCTGAGAGGAACTACAAGCTGCTAACCGATGAAGGAAGCCAGGACTTCAAGCTTTCTCCTGCTGGAAGACTTGATTCTTCGCCTAGTTGGAGTCCA CCATCATCGCCCGAGTTAGATATTGGCTGGATGGATAGTGGCAGCGACGACATTTTCAACTTCAAGCTGATTGATTTCCCCCTAAGCTGTTGGAGTTTGA AGCATTGCTCGTCCATATTATTGGTTGGCTAA
AA sequence Show only first row Show all	>Lus10003273 pacid=23147842 polypeptide=Lus10003273 locus=Lus10003273.g ID=Lus10003273.BGIv1.0 annot-version=v1.0 MASTVRQDRILKNVWVKPDASKSSKKGLGLAGRKPLGDLSNAVKNQSSSASLNQTSKKASVSVGGKASRNRKVLSDISNSAKLQKETTSKKTLVKECLSV VCEEQPLAGECGIAEEGFLHNHDECIKAQTQAMDVDEFMKIISMENDCSTKFGSPRVVATPTRFDPESPERNYKLLTDEGSQDFKLSPAGRLDSSPSWSP PSSPELDIGWMDSGSDDIFNFKLIDFPLSCWSLKHCSSILLVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003273 [exp]	0	1
AT5G56120			unknown protein		Lus10027112 [exp]	4.6	0.9008
AT4G16807			unknown protein		Lus10010996 [exp]	6.3	0.8840
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10041009 [exp]	12.1	0.8837
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	16.9	0.8749
					Lus10000588 [exp]	18.8	0.7515
AT5G56120			unknown protein		Lus10008355 [exp]	19.6	0.8699
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	22.7	0.8682
AT5G04250			Cysteine proteinases superfami...		Lus10037388 [exp]	26.4	0.8263
AT5G50930			Histone superfamily protein (....		Lus10022425 [exp]	29.5	0.8222
AT4G38370			Phosphoglycerate mutase family...		Lus10014434 [exp]	30.0	0.7667

Compare expression of checked genes

Lus10003273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.