Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42960 206 / 3e-59 Protein kinase superfamily protein (.1) AT3G59110 204 / 1e-58 Protein kinase superfamily protein (.1) AT1G09440 198 / 8e-57 Protein kinase superfamily protein (.1) AT1G56720 199 / 9e-57 Protein kinase superfamily protein (.1.2.3) AT4G02630 197 / 4e-56 Protein kinase superfamily protein (.1) AT3G24540 197 / 5e-56 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G24550 199 / 1e-55 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G01540 195 / 1e-55 Protein kinase superfamily protein (.1.2) AT5G18500 195 / 2e-55 Protein kinase superfamily protein (.1.2) AT1G20650 192 / 3e-55 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006544 [exp] 1155 / 0 AT3G59110 205 / 1e-57 Protein kinase superfamily protein (.1) Lus10030863 [exp] 229 / 4e-67 AT1G09440 163 / 2e-42 Protein kinase superfamily protein (.1) Lus10019933 [exp] 197 / 2e-57 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10006215 [exp] 199 / 4e-57 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10028549 [exp] 194 / 1e-56 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10010703 [exp] 193 / 7e-56 AT1G24030 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10018722 [exp] 196 / 2e-55 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10018855 [exp] 194 / 2e-55 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10029187 [exp] 192 / 2e-55 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G030600 [exp] 714 / 0 AT1G24030 191 / 2e-55 Protein kinase superfamily protein (.1.2) Potri.013G053001 [exp] 707 / 0 AT1G79620 201 / 5e-55 Leucine-rich repeat protein kinase family protein (.1) Potri.018G107901 [exp] 216 / 1e-62 AT1G51830 164 / 2e-43 Leucine-rich repeat protein kinase family protein (.1) Potri.008G145900 [exp] 203 / 7e-60 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G095900 [exp] 201 / 8e-59 AT1G24030 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 202 / 1e-57 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 198 / 1e-57 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.013G003700 [exp] 200 / 4e-57 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G059000 [exp] 198 / 3e-56 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001600 [exp] 196 / 5e-56 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003274 pacid=23147847 polypeptide=Lus10003274 locus=Lus10003274.g ID=Lus10003274.BGIv1.0 annot-version=v1.0 ATGAAGGGCATGTCCCCTTATAAGGTCGCTTGGCAGAAAGTCAGCTTCTTTTTCATAGCAGCCTTCTTCAGCCATGCGTCAGGTGAATGTGTATTGGACT TCAACGACGAGTTCCCTTATCAACCAACGGGCGAATGCATCGGTACGAATAATCAGCTGCAACTGAGGGAATTGAGCTCCATAAGTACAACTTTGTGCTG TAGAAATGTCCTTAACGTCATAACTAAAAATCTTGCTCTAAGAGTGAGTCAAAACCATGGTGCACTATTTCTTCCACAGTATCAATGGAAGGACTGTTCG GGGCCGTTCCCTCAGCAGAAATCAGTGTCTCCTCTCTCTTGTGGGTTCGATGTTCTTTACAGTGGGAGTGGCCCTTGTTCAAGCTTGTCCATGGCAGCAA TGGAGCAGGAGGCAGGGTTCAGAACTACCGTAAACTCTTGCTCAAACCTCAACGCTTCTTCATCGTTCGATGATGCTTGCAGTGGTTGTGTTGTGGCAAT TGGGTCTTTGACTAGACATCTGCTGTCGAACTCTTATGTCAGCAGTGATGACACCACTCAAGTGATGATATGCACAGTATCTGTCGTGGTTGCGATTGCT GGAGAGAAATTGGGGCAAGGGGATTCTATCGATGATCTTTATAGGTGCTTGCCTGCCATGGAGGATTTTGGTGACTCAAATGATGGGTACATAAGAATCA AAAATTCTGTGGCCAAAGAGGTAGGTTCAGTGATGATAGCAGTTGTGACACTGATCCTGGTCCTTGTTCTAGTAAAGTTTGTGAGAAGGAACAAGGACAA AGGCAAGAGGAAAGCCGGGAAGCCACTTCTCGAAACTCAAGAAGTCGCTGCATGGTCCGGACTCTACAGATTTTCTAAGAACGAGATCCAGAATGCCATG AACTACAGCAGTGAGAAGACTTGCCTTGGGAGAGGAAGTGCTGGCCAAGTGTATAGAGGAGTTTTGCCTAGTGGACAAGTTGTTGCCATTAAGCACATCC ATCAGGGCCATACCTCCGATTCTTTCACCAGAGAAGTTGAGGGCCTTTCCAGGATTAGACATCCGAATCTCGTCTGCCTCTTTGGTTGTTGCATTCATGG CTCCGATCGATACCTCGTTTATGAGTTCTGCTCTGCTGGCAACTTAGCTCAACATCTACTTCGAAAAGAATCTACACTTACTTGGGAAAGAAGAGTCAAG ATCCTGAAAGGCTGTGCCCTGGGTTTGAGATACCTTCACCATTATATCGACGGTTGCATTGTTCATCGAGACATCAAGCTTACAAACATACTATTGACGG AGGAGTTGGAGCCGAAGCTATCGGATTTCGGGCTAGCGAAGATGATTGGAATGGAAGAAAGCAAAGTTTTCACAGAAGTAAGAGGAACCATAGGCTACAT GGATCCTGAATACATGAGTAACGCCAAGTTGACATGTGCAAGTGATATATACAGCTTTGGGATAGTGATTCTTCAAATCTTGTCAGGAAAAAAAGTCATT GAGTTGGATCTTGATGCCAGAGACCAGCTCACCAGAAAGGCAAAGGATGTGAGTCTGGGGAAGCGCCCACTTGAAGATTTTGAGGATCCAAGGTTGAACG GGGAACTGAACAGGGAAGACTTCGAAGTGATCCTGCAGATTGCGGTTCTGTGTGTTGCGAAATCGAGCAAAGGGCGCCCCACGATTGATGTTGTATGGGA AGTTTTGGAGAAGGTCTGGAAGAACACAGTTTCTCAAAAGAAAACACGGTCAGAAGTTAGTTCACCTGGAGCCTCATATTCCCACTCCATAGATGTAATT TCTGCCTGA
AA sequence Show only first row Show all	>Lus10003274 pacid=23147847 polypeptide=Lus10003274 locus=Lus10003274.g ID=Lus10003274.BGIv1.0 annot-version=v1.0 MKGMSPYKVAWQKVSFFFIAAFFSHASGECVLDFNDEFPYQPTGECIGTNNQLQLRELSSISTTLCCRNVLNVITKNLALRVSQNHGALFLPQYQWKDCS GPFPQQKSVSPLSCGFDVLYSGSGPCSSLSMAAMEQEAGFRTTVNSCSNLNASSSFDDACSGCVVAIGSLTRHLLSNSYVSSDDTTQVMICTVSVVVAIA GEKLGQGDSIDDLYRCLPAMEDFGDSNDGYIRIKNSVAKEVGSVMIAVVTLILVLVLVKFVRRNKDKGKRKAGKPLLETQEVAAWSGLYRFSKNEIQNAM NYSSEKTCLGRGSAGQVYRGVLPSGQVVAIKHIHQGHTSDSFTREVEGLSRIRHPNLVCLFGCCIHGSDRYLVYEFCSAGNLAQHLLRKESTLTWERRVK ILKGCALGLRYLHHYIDGCIVHRDIKLTNILLTEELEPKLSDFGLAKMIGMEESKVFTEVRGTIGYMDPEYMSNAKLTCASDIYSFGIVILQILSGKKVI ELDLDARDQLTRKAKDVSLGKRPLEDFEDPRLNGELNREDFEVILQIAVLCVAKSSKGRPTIDVVWEVLEKVWKNTVSQKKTRSEVSSPGASYSHSIDVI SA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10003274 [exp]	0	1
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10042755 [exp]	2.8	0.7791
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10005758 [exp]	2.8	0.7408
					Lus10040835 [exp]	3.5	0.7842
AT5G66780			unknown protein		Lus10041741 [exp]	4.6	0.7610
AT3G10910			RING/U-box superfamily protein...		Lus10033425 [exp]	5.9	0.7239
AT5G19360		CPK34	calcium-dependent protein kina...		Lus10036050 [exp]	11.3	0.6570
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	12.0	0.7021
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	14.4	0.7005
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042691 [exp]	15.6	0.6219
AT5G01140			Protein of unknown function (D...		Lus10040317 [exp]	20.9	0.6044

Compare expression of checked genes

Lus10003274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.