Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 391 / 2e-136 SAG12 senescence-associated gene 12 (.1) AT3G48340 369 / 2e-127 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G50260 368 / 4e-127 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G19390 366 / 6e-125 Granulin repeat cysteine protease family protein (.1) AT3G49340 346 / 1e-118 Cysteine proteinases superfamily protein (.1) AT5G43060 348 / 6e-118 Granulin repeat cysteine protease family protein (.1) AT3G48350 345 / 6e-118 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT1G20850 341 / 1e-116 XCP2 xylem cysteine peptidase 2 (.1) AT1G47128 345 / 2e-116 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT4G35350 340 / 3e-116 XCP1 xylem cysteine peptidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006542 [exp] 680 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10029799 [exp] 658 / 0 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10028502 [exp] 653 / 0 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10020722 [exp] 652 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 652 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 652 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10009145 [exp] 652 / 0 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1) Lus10020723 [exp] 649 / 0 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10028501 [exp] 649 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 546 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 545 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 543 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 542 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 542 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 538 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 501 / 5e-180 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 482 / 9e-173 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 479 / 3e-171 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 478 / 3e-171 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10003275 pacid=23147851 polypeptide=Lus10003275 locus=Lus10003275.g ID=Lus10003275.BGIv1.0 annot-version=v1.0 ATGGCGGCCTTCAACAACAACTTCTTTCTCTTGGCTTCCATTTTCATCGTAGGAGCCTTGGCTTCTAACGCCACGGCACGCTACACACTTCCTGAAGCCG CCATGCATCTAAGGCACGAGCAATGGATGACTCATTATGGACGAGTCTACAACACTCCGATCGAAAAGGAGACTCGCTTCCGGATTTTCAAGGACAATGT AGCATTCATAGACTCTTCCAATGCTGTGGGAAACAAGTCTTACAAGCTGGGAGTCAATCAGTTTTCGGATTTGACTAACGAGGAGTTCAAGTCCTCTAGG AACGGGTTCAAGGGACACATGTGTTCTCCACAACATGGAACTTTCAGGTATGAAAATGTGAGCGCGGTTCCGACAACTATGGACTGGAGGAAGAAGGGAG CAGTCACTCCTATCAAAGACCAAGGTCAGTGCGGAAGCTGTTGGGCGTTCTCCGCAGTGGGAGCAATGGAGGGAATCCATCAGCTCAGTACAGGGAAACT GGTGTCCCTCTCGGAGCAAGAATTGGTTGATTGTGACACCAAGGGAGAGGACCAAGGCTGCAGCGGTGGGTTGATGGATGATGCGTTTAAGTTCATCATT CAAAACAAGGGCTTGACCACCGAGACTAACTACCCTTATGATGCTGCTGATGGAACGTGTAATGCTAACAAAGAAGGCAGCAGCGCCGCCAAGATTACTG GCTACGAAGACGTGCCGGCCAACAACGAGGTAGCATTGATGAAGGCGGTAGCAAACCAACCAATTTCTGTTGCGATTGATGCGGGAGATTCATCGTTTCA GTTTTACTCGAGTGGGATCTTTACCGGAGAATGTGGAACCGAACTAGATCATGGAGTGACGGCAGTTGGGTATGGAGAGAGCGGTGGGATGAAGTACTGG TTAGTGAAGAACTCGTGGGGAGCACAGTGGGGAGAGGCCGGGTACATCCGAATGCAGAGAGATGTTACTGCTAAAGAAGGTCTCTGCGGCATAGCAATGC AGGCTTCATATCCTACTGCTTGA
AA sequence Show only first row Show all	>Lus10003275 pacid=23147851 polypeptide=Lus10003275 locus=Lus10003275.g ID=Lus10003275.BGIv1.0 annot-version=v1.0 MAAFNNNFFLLASIFIVGALASNATARYTLPEAAMHLRHEQWMTHYGRVYNTPIEKETRFRIFKDNVAFIDSSNAVGNKSYKLGVNQFSDLTNEEFKSSR NGFKGHMCSPQHGTFRYENVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLVSLSEQELVDCDTKGEDQGCSGGLMDDAFKFII QNKGLTTETNYPYDAADGTCNANKEGSSAAKITGYEDVPANNEVALMKAVANQPISVAIDAGDSSFQFYSSGIFTGECGTELDHGVTAVGYGESGGMKYW LVKNSWGAQWGEAGYIRMQRDVTAKEGLCGIAMQASYPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10003275 [exp]	0	1
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	2.4	0.9336
					Lus10013654 [exp]	4.2	0.9387
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10037484 [exp]	12.0	0.8931
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	13.3	0.9225
AT5G48140			Pectin lyase-like superfamily ...		Lus10013780 [exp]	13.6	0.9131
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	14.7	0.9132
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	15.9	0.9198
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10026641 [exp]	16.1	0.8726
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	16.2	0.8784
AT3G46140			Protein kinase superfamily pro...		Lus10029018 [exp]	20.8	0.8956

Compare expression of checked genes

Lus10003275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.