Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38430 158 / 1e-44 unknown protein AT3G54310 142 / 8e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030356 [exp] 372 / 2e-127 AT2G38430 225 / 6e-70 unknown protein Lus10004782 [exp] 54 / 2e-08 AT3G54310 47 / 1e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G029900 [exp] 289 / 8e-95 AT2G38430 311 / 3e-103 unknown protein Potri.019G030300 [exp] 277 / 2e-90 AT2G38430 313 / 6e-104 unknown protein Potri.019G029800 [exp] 266 / 6e-86 AT2G38430 305 / 8e-101 unknown protein Potri.019G030200 [exp] 248 / 1e-78 AT2G38430 275 / 6e-89 unknown protein Potri.019G030050 [exp] 88 / 2e-21 AT2G38430 81 / 3e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003276 pacid=23147841 polypeptide=Lus10003276 locus=Lus10003276.g ID=Lus10003276.BGIv1.0 annot-version=v1.0 ATGGCTCGTTACGTTCCTCCAAACAAGCGTCACTCAGTGGAAAAAGGGAGACCATGTCCAATTCCAGAGGCTTTAGCTCCCCATTTGAGGAAGAGTCTGA ATTTAGGCCTCCGGGGTTCTGGTGGGGTTAATAAATATAAAGCTGACAAGATTATCTACGCCAACAATCCTATTTATAGATGGTTTGCAGTTGGTTTGGA TGATCATCGTCAATTTCCTCCTCATGTTAGTCTCGAGCCGATCACTTTTGACAGCATCGAGCAGAGGGGAACCAATGATGCAGATTGTGATAATCTTCAT ACTTCACATGTGTTTGTAGAGAGTGATGAACTAGTAGCAAAGGACTTGAACAACAATCCTTGGGAGGTTATAGCAGATTCTACTCTCAAGGCTTTGCTCT CTTCTTTCCAGATATTGAGGACTGAAGTGGAGGCTGATCAGAGATTGAAACTTATGAAGAAGACTTCACTAGTTGCTAGATTCGGGAAGATAACTTTTTG CGATGGCATTCAAATGCAAGCTTGGATCGACGAAGGTACTATTGACTTCGTCATCCTTGGGAAACTGCATGAGCCCTTCACTGAAGCTAGGAGGCCTTGG AATGGATCAGTTGGAAAATGCTTTGACAAGTTCAAAACGTTTCTTGTACACGACTTTCCTTCTTCATACATTGATAGGATTACAGGTCAAGTTGTCCCCA TCATGGGATTGGATTTTGAGGAGCAGAAGGAACTGTATTATGTGAAGGTCGAATTAAACCCATGGAGGCAGAAGGTCATGGATATATCGTGTCTCGAGAA GGATGTAGACATCAGGCTAATGCTATTGTCCAAGTTGATCTTCACAGCGCTGACAGATGATGAGATGAAGAGCATTCTAGATCTGATTGACTGTGCAGTG GTGGATTCAGAGGTGAAAGGTGGGTTGAAGTGGCCACTGGGGAAAAAGCACTCTGGAGATGGTAGGTACAGTGTTATTTGGGTGTGGCACTCAGTCCACA AAGCATATAGAAACGAATTCCTCCTGCTGAAAGTAAGGGATGTCGATCGTGAAGTGGACTCTGAATATGTATCGAACTTGCTTAAGGACAACTTAAGGCT GATTTGGTTGCAGTTCCTGTCCTGCGAGAAATTCCCGTGA
AA sequence Show only first row Show all	>Lus10003276 pacid=23147841 polypeptide=Lus10003276 locus=Lus10003276.g ID=Lus10003276.BGIv1.0 annot-version=v1.0 MARYVPPNKRHSVEKGRPCPIPEALAPHLRKSLNLGLRGSGGVNKYKADKIIYANNPIYRWFAVGLDDHRQFPPHVSLEPITFDSIEQRGTNDADCDNLH TSHVFVESDELVAKDLNNNPWEVIADSTLKALLSSFQILRTEVEADQRLKLMKKTSLVARFGKITFCDGIQMQAWIDEGTIDFVILGKLHEPFTEARRPW NGSVGKCFDKFKTFLVHDFPSSYIDRITGQVVPIMGLDFEEQKELYYVKVELNPWRQKVMDISCLEKDVDIRLMLLSKLIFTALTDDEMKSILDLIDCAV VDSEVKGGLKWPLGKKHSGDGRYSVIWVWHSVHKAYRNEFLLLKVRDVDREVDSEYVSNLLKDNLRLIWLQFLSCEKFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38430			unknown protein		Lus10003276 [exp]	0	1
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10029956 [exp]	3.2	0.8143
AT4G17540			unknown protein		Lus10040155 [exp]	6.3	0.8423
AT5G14500			aldose 1-epimerase family prot...		Lus10014621 [exp]	6.5	0.8677
AT1G73390			Endosomal targeting BRO1-like ...		Lus10026368 [exp]	8.1	0.8121
					Lus10030083 [exp]	11.7	0.8147
AT1G05170			Galactosyltransferase family p...		Lus10039657 [exp]	13.9	0.8042
AT2G26600			Glycosyl hydrolase superfamily...		Lus10038099 [exp]	14.7	0.7845
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	19.4	0.8299
AT4G19500			nucleoside-triphosphatases;tra...		Lus10006907 [exp]	20.5	0.7827
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10021854 [exp]	22.0	0.8235

Compare expression of checked genes

Lus10003276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.