Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 296 / 3e-96 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G35615 266 / 9e-85 Eukaryotic aspartyl protease family protein (.1) AT1G64830 262 / 3e-83 Eukaryotic aspartyl protease family protein (.1) AT1G31450 243 / 6e-76 Eukaryotic aspartyl protease family protein (.1) AT2G28010 178 / 1e-51 Eukaryotic aspartyl protease family protein (.1) AT2G28040 177 / 5e-51 Eukaryotic aspartyl protease family protein (.1) AT2G28030 174 / 4e-50 Eukaryotic aspartyl protease family protein (.1) AT2G03200 165 / 6e-46 Eukaryotic aspartyl protease family protein (.1) AT2G28220 169 / 7e-46 Eukaryotic aspartyl protease family protein (.1) AT1G01300 145 / 2e-38 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039839 [exp] 495 / 2e-174 AT5G33340 294 / 2e-95 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003280 [exp] 491 / 7e-173 AT2G35615 314 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10029913 [exp] 489 / 2e-172 AT5G33340 291 / 2e-94 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10039792 [exp] 390 / 2e-133 AT5G33340 228 / 2e-70 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 360 / 4e-121 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 337 / 5e-112 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 332 / 3e-110 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 330 / 2e-109 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 326 / 5e-108 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 300 / 4e-98 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 277 / 6e-89 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 243 / 1e-75 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 173 / 3e-49 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 155 / 2e-42 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 150 / 3e-40 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 147 / 3e-39 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 147 / 4e-39 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 145 / 1e-38 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 141 / 4e-37 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10003279 pacid=23147845 polypeptide=Lus10003279 locus=Lus10003279.g ID=Lus10003279.BGIv1.0 annot-version=v1.0 ATGGCTGCTGTTTCCATTATTCACTCAGCGCTAGCCATAGTACCAATGATGTGCTACTTCATGATAACCAACTCTGAGGGCAGAGGATTCAGCGTCAACA TATTCCACCGCAACTCTCATGTTTCCCCTTTTTACAACCCACATGAGACCCGATATCAGCGATTTGAAAAAACTTTCAACCGACCTGTCAACAGGTTCAA CCGGCTCAACGGTATCAACCTTTCTGACGCCCATTCTGAACTGACCGCGGACATCAATGGCGGATACCTGATGAACATCTCCATTGGCACTCCCCCATTT CAAATCCTATTGACCTTTGATACTGGGAGCGAAGTCACATGGATGGAGTGCACTCCTTTCCCTAACAAAGGTAACCTCTTCACCACGGCATCCTCAAGTA CGTACAAAACAATTCCATGTCCATCCAAAGATTGCGACGATCTTGGTCCCGAAGGAGCCTTTTGTTCCCCTGTTAACGATAATGTTTGCCATTACAAAAT TACATACCCTGACAAGACCCACTCACTTGGCGACTTTGCGTTCGAGACTCTGACTCTGAGGTCGTCGTCCGATCCAGGAGGACCCGTTTTGTTTGAAAAT ACTTTCATTGGGTGTAGCTATGACACTGACTTGAACTTAGAGGGATCCGGTATCGCTGGACTTGGACGTGGACCTGCTTCACTCATCAACCAACTTGGCC CTTCCATTGATTGGAAATACTCATATTGCTTGCCCATTTCGGACGGGGATAAACCATTGAGTACGATTGATTTTGGTGGGAATGTTACAGGCGACGGTGT CGTTTCCAGCGCCTTGATCTATGACCCGTTGTTGCCGATCTACTTCTTCCTTAGGTTGGAAGCGGTGAGTGTGGGGGATGTTAGAATACAGTTTGGAGGC TCCATTAGTGATGATCAGAACATCGCAATTGACTCTGCTACCACAGTCTCGGTTCTCCCCTCTGGATTCTTCTTCCAATTTTCGTCTGAGGTGCAAAGAC AGATCGTCGACAGAGAGAAAGCTAAGAACCCACCCTCATTCTTCACTCTCTGTTACGAGTTGGAACCAGCCGGTCCCATTAATGCTCCTCAGGTCACCAT GCATTTCGTCGATGCCGACGTGGAGCTAAGTCCATCCAACTTGTTTGTCAAGGTCGACGATACGCTGACGTGTTTCGCTTTCCGCCCGAGCGACACCGTC TCGATTTATGGGAATGTGGCGCAGCAGAATTTCCTTATTGGGTATGATATTGGGAACAAAATGTTGTCTTTCAAGCCAGCCGAGTGTGGCCATAATTAA
AA sequence Show only first row Show all	>Lus10003279 pacid=23147845 polypeptide=Lus10003279 locus=Lus10003279.g ID=Lus10003279.BGIv1.0 annot-version=v1.0 MAAVSIIHSALAIVPMMCYFMITNSEGRGFSVNIFHRNSHVSPFYNPHETRYQRFEKTFNRPVNRFNRLNGINLSDAHSELTADINGGYLMNISIGTPPF QILLTFDTGSEVTWMECTPFPNKGNLFTTASSSTYKTIPCPSKDCDDLGPEGAFCSPVNDNVCHYKITYPDKTHSLGDFAFETLTLRSSSDPGGPVLFEN TFIGCSYDTDLNLEGSGIAGLGRGPASLINQLGPSIDWKYSYCLPISDGDKPLSTIDFGGNVTGDGVVSSALIYDPLLPIYFFLRLEAVSVGDVRIQFGG SISDDQNIAIDSATTVSVLPSGFFFQFSSEVQRQIVDREKAKNPPSFFTLCYELEPAGPINAPQVTMHFVDADVELSPSNLFVKVDDTLTCFAFRPSDTV SIYGNVAQQNFLIGYDIGNKMLSFKPAECGHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003279 [exp]	0	1

Compare expression of checked genes

Lus10003279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.