Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 315 / 6e-104 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G35615 313 / 4e-103 Eukaryotic aspartyl protease family protein (.1) AT1G64830 296 / 1e-96 Eukaryotic aspartyl protease family protein (.1) AT1G31450 286 / 1e-92 Eukaryotic aspartyl protease family protein (.1) AT2G28010 176 / 9e-51 Eukaryotic aspartyl protease family protein (.1) AT2G03200 171 / 3e-48 Eukaryotic aspartyl protease family protein (.1) AT2G28030 169 / 3e-48 Eukaryotic aspartyl protease family protein (.1) AT1G01300 164 / 3e-45 Eukaryotic aspartyl protease family protein (.1) AT2G28040 157 / 1e-43 Eukaryotic aspartyl protease family protein (.1) AT3G61820 149 / 5e-40 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039839 [exp] 506 / 1e-178 AT5G33340 294 / 2e-95 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003279 [exp] 491 / 6e-173 AT5G33340 296 / 2e-96 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10029913 [exp] 481 / 6e-169 AT5G33340 291 / 2e-94 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 416 / 2e-143 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10039792 [exp] 383 / 6e-131 AT5G33340 228 / 2e-70 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 375 / 6e-127 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 373 / 3e-126 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 371 / 2e-125 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 370 / 2e-125 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 315 / 5e-104 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 279 / 8e-90 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 268 / 2e-85 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 169 / 1e-47 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 162 / 4e-45 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 160 / 4e-44 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 159 / 8e-44 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 159 / 8e-44 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 154 / 1e-41 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G179500 [exp] 146 / 4e-39 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10003280 pacid=23147833 polypeptide=Lus10003280 locus=Lus10003280.g ID=Lus10003280.BGIv1.0 annot-version=v1.0 ATGGCTGCCATTATTCACTCATCACTAGCCATAGTAGCTGTCCTTTGTTGCTTCATAGGCGCCAACTCTGAGGCGAGAGAATTCAGCATTAGTTTAATTC ATCGCGACTCCCCTATTTCCCCGCTTTACAACCCACATGAGACCCCATATCAGCGACTCCAAAAAACTCTTAGCCGAACCATCAACCGTATCAACCGGCA CAACAATGCCCGTCTTTCTGTCTATTCCGACTTGTACACAGACCTCGACGGAGAATACTTGATGAACATCTCCATCGGCACTCCACCGTTCAAAATCCTA GCGATTGCCGATACGGGAAGCGACATCATATGGACACAGTGCAGCCCTAACAACAGTTTCCTCTTCAACCCAGCATTATCAAGTACCTACAAAACGCTGC CGTGTCAATCCAGAACTTGCGCCAGTTGGGGTCGCGAAGGAGCCTTTTGTGCCCGTAATGACGGCGTTTGCAATTACAGAGCTCGATACGTTGACACTTC CCACTCAATTGGTGACTTTGCTTTCGAGACTCTGACTTTAGATGCGTCCGCTCCAGGACGCACCGTCTCTTTTCAAAATACTATCATTGGGTGCGGCAAC GATAGCATGTTGACTTACAACACATTGGGCACCGGCATCGTTGGGCTTGGGGGTGGGCCTGCGTCACTCATCAACCAACTGGGCCACTCCATTGGTTGGA GATTCTCATATTGCTTGCCCCTTAGAAATGGGAATAAGTTCAAGAGCACGATTAATTTTGGGCAGAACGTCACAGGCTACGGCTTCGTTTCAACTCCCAT GATCTACGACCCACTGCAGCCGTACTACTTCTTCCTTAGGCTGGAAGCGATCAGCGTGGGGGATGTCAGAATACCGTTCCGAGGCTCAGTTGACAATGAT AAGGATATCGTCATCGACTCCGGTACCACAATCTCGGTTCTCCCCGCCAGATTCTTCTCCCGGCTATCGTCCGAGGTGGAAAGACAGATCGTCGGCAGGA AAAAAGTGGCAGACCCATTCAAATTCTTCAGCCTCTGTTACAAGATAGATCCCGCGGGTCCGAATGCTCCCCCGATCAAGGTCCATTTTCTCCGTGCCGA CTTGGAGCTACCCATGTCTAATGTTTTCTTCAAGATCAGCAATAATGTGACGTGTTTCGCGTTCCGCCCGACGACTGACGGCAACTCGTTTTACGGCAAT GTGGCACAACAGAACTTTCTGATTGGATATGATCTTAAGAAGAAGGTTGTGTCTTTTAAGCGAGCCGATTGTGGCCATAAGTAA
AA sequence Show only first row Show all	>Lus10003280 pacid=23147833 polypeptide=Lus10003280 locus=Lus10003280.g ID=Lus10003280.BGIv1.0 annot-version=v1.0 MAAIIHSSLAIVAVLCCFIGANSEAREFSISLIHRDSPISPLYNPHETPYQRLQKTLSRTINRINRHNNARLSVYSDLYTDLDGEYLMNISIGTPPFKIL AIADTGSDIIWTQCSPNNSFLFNPALSSTYKTLPCQSRTCASWGREGAFCARNDGVCNYRARYVDTSHSIGDFAFETLTLDASAPGRTVSFQNTIIGCGN DSMLTYNTLGTGIVGLGGGPASLINQLGHSIGWRFSYCLPLRNGNKFKSTINFGQNVTGYGFVSTPMIYDPLQPYYFFLRLEAISVGDVRIPFRGSVDND KDIVIDSGTTISVLPARFFSRLSSEVERQIVGRKKVADPFKFFSLCYKIDPAGPNAPPIKVHFLRADLELPMSNVFFKISNNVTCFAFRPTTDGNSFYGN VAQQNFLIGYDLKKKVVSFKRADCGHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35615			Eukaryotic aspartyl protease f...		Lus10003280 [exp]	0	1
					Lus10003893 [exp]	10.7	0.8553
AT4G15690			Thioredoxin superfamily protei...		Lus10002887 [exp]	15.0	0.8429
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	15.7	0.8516
AT1G25480			Aluminium activated malate tra...		Lus10021694 [exp]	18.8	0.8361
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	20.0	0.8082
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	20.9	0.8411
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	22.6	0.8310
AT3G48200			unknown protein		Lus10008827 [exp]	23.2	0.8186
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	25.3	0.8374
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	27.2	0.8338

Compare expression of checked genes

Lus10003280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.