Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 147 / 4e-37 Ankyrin repeat family protein (.1) AT5G04700 140 / 1e-34 Ankyrin repeat family protein (.1) AT5G04730 140 / 1e-34 Ankyrin-repeat containing protein (.1) AT5G35810 129 / 1e-32 Ankyrin repeat family protein (.1) AT5G04690 131 / 1e-31 Ankyrin repeat family protein (.1) AT5G04680 124 / 4e-29 Ankyrin repeat family protein (.1) AT3G54070 120 / 2e-28 Ankyrin repeat family protein (.1) AT1G03670 64 / 3e-10 ankyrin repeat family protein (.1) AT3G01750 62 / 8e-10 Ankyrin repeat family protein (.1) AT4G03460 61 / 2e-09 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016672 [exp] 639 / 0 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10014701 [exp] 498 / 2e-167 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10000489 [exp] 390 / 1e-127 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10014030 [exp] 187 / 1e-49 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10019887 [exp] 180 / 3e-47 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10038357 [exp] 174 / 2e-45 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10027721 [exp] 167 / 2e-43 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10035567 [exp] 128 / 2e-31 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10014031 [exp] 84 / 3e-19 ND 146 / 2e-42
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048832 [exp] 635 / 0 AT3G18670 195 / 2e-53 Ankyrin repeat family protein (.1) Potri.002G048666 [exp] 474 / 3e-153 AT5G04700 181 / 3e-47 Ankyrin repeat family protein (.1) Potri.004G003401 [exp] 214 / 1e-59 AT5G35810 154 / 2e-41 Ankyrin repeat family protein (.1) Potri.006G062700 [exp] 195 / 4e-53 AT3G54070 334 / 2e-106 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 195 / 2e-52 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.011G015750 [exp] 182 / 2e-50 AT3G18670 144 / 1e-37 Ankyrin repeat family protein (.1) Potri.006G062900 [exp] 186 / 3e-50 AT3G18670 280 / 4e-86 Ankyrin repeat family protein (.1) Potri.011G016300 [exp] 185 / 1e-49 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.006G281600 [exp] 185 / 1e-49 AT3G18670 167 / 2e-44 Ankyrin repeat family protein (.1) Potri.011G015700 [exp] 181 / 4e-49 AT3G18670 147 / 3e-38 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003282 pacid=23160843 polypeptide=Lus10003282 locus=Lus10003282.g ID=Lus10003282.BGIv1.0 annot-version=v1.0 ATGGAGGATTCCTTGTTCGAAGTTGTGATGCAGGGCAGGTGGGAGAGAGTGGTGATAGCTTATGAAAATCCTGAAACCCAGAAGTTGAAAATCACCACAT CAGAAGACACAGTCTTGCACATTGCTATTTCAAACGGCCAGACTGATACGGTGAGGCAACTGGTTGAGCAGATCGAGGAGACACATGCTGCATCAGTTTT GGGATTACAGAATGTGATGGGCTCCACGGCCATCCACTTAGCAGCCGCATTTGGTGATGCTGTCATGTGTGACTGCATGGCTACCAAAGCCCCACAGCTC ATTGGGAGCAGCAATAACGACGGTGAGACACCCATCTTCCTTGCAGCTGCCTCCGGCAAGAAAGACAGTTTCTTTTGTCTCCTGGAGAAACTAGAAACCG AACAAGCAGATGAGATCTGTCGGAGAAGGTCTCGTAAAGGTGACACCATTCTTCATGCTGCAATCTCCGGGGAACATTTTGAATTGGCATACCATATAAT ACAGGAGTACCCAGAGCTTGTGAACACTAGAAGGGAGGATGGAGCGTCTCCCCTGCATATTCTAGCCAGCAAACCTAATGCATTCAGAAGCAGTTCTCAC TTCGGCCTATTTGATCGTATCATCTACTGCTGTGCAATTGTTGATAACCTAGAGCAAACACATGGTTTGCCGAGCTTGAAAGATTCCGATAGGAGTAGTA CATGTCCCGAAAACTACGCGACATGCATCACCTTTTTTCATCTGATGCAGAAGGTCGCAGCTACAGCTTCACGGTCCATTTGTCTAATACTAAAAAACTG CACCAGAAGAAAAAGCAGAGACGAGGATCCAGAAAGCGTCACCCGAAACAATGATAGAAATCCAGAATTGATAAGAAGAGGCGACCTGACAGAAATGTTC CCACCCAATTATACAACAACAATACAACTTTTCAAGCTCATGACCAAGGCACTGCTTATTGTTCTGGGACTCGGACACACGAGAGTATCAAAGATCCAAA GGGTAAAAGTGGCGCACACATGGGCGACACTAGTCCTCAATGCATTGGTGGACAGAGCTTCACTTTACAAGTACCAAGACAGCGGCCGAAAACCTCCCGG TATCGATGACCAGACATCTCAGAGCTCTCTAGTCAATAATAAGTTTGTGCCACACTTGGGAGAAAGAAAGGAGGAAGCCATTTTAGATGCAGCAAAGATG GGGATTACATACATAGTGGACAAGTTCATCGAAGCCTGTCCAGCAGCAATTCAAGAGTTAAACACGGAGACGAAGAATCTTGTCCTGGAGTCCTACGAGA AGGAAAAAGAAAAAGCATCTGAGTTTGAATCAGTGATCAAAGAAACACCGATATTGATAGCAGCTAAGATGGGTGTGAAAGAGATGGTGCAGAAAATACT GGAAACATTTCCTGTTGCCATTCACGACCTGGACTCTAATAATAAGAACGTTGTGCTCTTGGCTGTAGAGAACAAACAAGTACATGTGTTTAAATTTCTG AAGGAGAATGTCATACTAAAGGAGACTATATTTGGACGAGTTGACAAAGATGGGAATAGCGCCTTGCATCTCGCTGCAACTTTTGGAGACTCGAGACCAT GGCTTATTCCGGGCGCTGGACTCCAAATGCAGTGGGAACTCAAATGGTACAAGTTTGTGAAGCAATCAATGCCACCCAACTTCTTTCCCCGATACAACAA GAGAGGTTACACCCCAAAACAGATACTAGCGGAGACACACATACAACTTGCTAAAAATGGTAGCGAATGGCTAACCAAAACCAGCGAGTCATGCTCTGTT GTGGCTGCACTTATAGCAACGGTTGCGTTTGCAGGATCAGCGACTGTGCCAGGGGGTACTAAGGAAGCCACTGGTGAGCCAGTTCTTTTGGAGGAGCCTG CATTCAATGTCTTTGCCATAACATCCTTGGTGGCCCTCTGCTTATCTGTAACATCCCTTGTCACCTTTCTTACAGTCCTCACCTCTCGTTTTGAACACAG AGACTTCGCCAAGACGCTGCCTCGGACCCTTATTTGGGGTTTAACCTCACTCTTCCTTTCCATAACTACCATGTTGGTCTCCTTTTGTGCTGCACATTTC TTTACCCTGGAAGACAACCTTAGGATGTTTTCCTACCCAGTATATGCTGCAACTTGTTTGCCAGTCACCATTTTTCTTCTTTCAACTTTCTCCCTCTATT ATGATCTCATATGGGCTATATACTCTAAGGAGCCACAACACAGCTTCAAGGAGTTTCACCCTTAA
AA sequence Show only first row Show all	>Lus10003282 pacid=23160843 polypeptide=Lus10003282 locus=Lus10003282.g ID=Lus10003282.BGIv1.0 annot-version=v1.0 MEDSLFEVVMQGRWERVVIAYENPETQKLKITTSEDTVLHIAISNGQTDTVRQLVEQIEETHAASVLGLQNVMGSTAIHLAAAFGDAVMCDCMATKAPQL IGSSNNDGETPIFLAAASGKKDSFFCLLEKLETEQADEICRRRSRKGDTILHAAISGEHFELAYHIIQEYPELVNTRREDGASPLHILASKPNAFRSSSH FGLFDRIIYCCAIVDNLEQTHGLPSLKDSDRSSTCPENYATCITFFHLMQKVAATASRSICLILKNCTRRKSRDEDPESVTRNNDRNPELIRRGDLTEMF PPNYTTTIQLFKLMTKALLIVLGLGHTRVSKIQRVKVAHTWATLVLNALVDRASLYKYQDSGRKPPGIDDQTSQSSLVNNKFVPHLGERKEEAILDAAKM GITYIVDKFIEACPAAIQELNTETKNLVLESYEKEKEKASEFESVIKETPILIAAKMGVKEMVQKILETFPVAIHDLDSNNKNVVLLAVENKQVHVFKFL KENVILKETIFGRVDKDGNSALHLAATFGDSRPWLIPGAGLQMQWELKWYKFVKQSMPPNFFPRYNKRGYTPKQILAETHIQLAKNGSEWLTKTSESCSV VAALIATVAFAGSATVPGGTKEATGEPVLLEEPAFNVFAITSLVALCLSVTSLVTFLTVLTSRFEHRDFAKTLPRTLIWGLTSLFLSITTMLVSFCAAHF FTLEDNLRMFSYPVYAATCLPVTIFLLSTFSLYYDLIWAIYSKEPQHSFKEFHP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	0	1
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	4.0	0.7520
					Lus10017946 [exp]	4.5	0.7290
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	8.8	0.7628
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010241 [exp]	9.0	0.7140
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	9.4	0.7097
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	10.7	0.7459
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	12.5	0.6780
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010801 [exp]	13.4	0.6891
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	15.4	0.7044
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	16.6	0.7088

Compare expression of checked genes

Lus10003282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.