Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59790 125 / 1e-32 Domain of unknown function (DUF966) (.1) AT3G46110 120 / 5e-32 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT2G28150 118 / 7e-30 Domain of unknown function (DUF966) (.1) AT5G10150 100 / 1e-23 Domain of unknown function (DUF966) (.1) AT1G05577 89 / 8e-20 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030328 [exp] 410 / 1e-145 AT5G59790 126 / 8e-34 Domain of unknown function (DUF966) (.1) Lus10004943 [exp] 133 / 1e-35 AT5G59790 303 / 4e-99 Domain of unknown function (DUF966) (.1) Lus10005442 [exp] 129 / 2e-34 AT5G59790 294 / 4e-96 Domain of unknown function (DUF966) (.1) Lus10040860 [exp] 129 / 5e-34 AT5G59790 301 / 1e-98 Domain of unknown function (DUF966) (.1) Lus10005887 [exp] 126 / 8e-33 AT5G59790 293 / 5e-95 Domain of unknown function (DUF966) (.1) Lus10016150 [exp] 120 / 1e-30 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10021417 [exp] 120 / 1e-30 AT2G28150 452 / 4e-155 Domain of unknown function (DUF966) (.1) Lus10037468 [exp] 77 / 1e-15 AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) Lus10003921 [exp] 73 / 3e-14 AT1G05577 159 / 2e-45 Domain of unknown function (DUF966) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209600 [exp] 120 / 2e-32 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 120 / 5e-32 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1) Potri.009G027500 [exp] 120 / 7e-31 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 120 / 2e-30 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.009G005800 [exp] 119 / 5e-30 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.001G235700 [exp] 116 / 3e-29 AT5G59790 343 / 6e-115 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 100 / 9e-24 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.009G024900 [exp] 82 / 2e-17 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.001G232300 [exp] 79 / 3e-16 AT1G05577 231 / 4e-72 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [flax] [poplar] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Lus10003286 pacid=23169857 polypeptide=Lus10003286 locus=Lus10003286.g ID=Lus10003286.BGIv1.0 annot-version=v1.0 ATGGAATATGTTGGAAGAATAGAGTTAACTACACCAAGGCGGTATCACAATCACATGGAAAATCTCACTCCTCCACATCAAAATCTGGTAGATTACTTGG ATCAGAACTCAGCTCTACATTCTCTTGAATTCATGAACATCAGGACCGACCTGAAGATCGTAACCAAGAGGAAAGCAGCGGTTGTTTATCACATCTCGCG TAACGGTCATCTCGAGCATCCTCATTTCTTGGAGGTCCCTATCTCTTCTTTTAAAGGCCTCTATCTCAGAGATGTGATCAGTGCTCTAAACTCTATCAGA GGTCCAGGCATGGCTAACTTATACTCTTGGTCAGCAAAGAGGAGCCATGGGAAAGGATTTGTGTGGAAGGACCTATCAGAGAAGGACTTGATACGACCTT ACAATGATGATGATGTTGATGAACAATACATTCTGAAAGGATCACCAGTCCCTGAACTCTCTCCATGGAACTTGATGAGATCCCCTGATGATACTCTAAC ATCTTCCACATCCAAACATACCTCAGGTTCCTCCGGTAGCTTGACAGATGAATTCGATTCTCCGGTCATCAGAAGGAAAAGCTTCCGACGGAGTACATTT AAGGATGTCGATGATCCCGAAACTGATAATGAGAAGCCACACAAGACCAGTACCGCCGAGATTAAGGAACTAGACTCTGGTTTTTCAACACCAAGAAATA ATGGTATCGCCAAGAAAGTAGATGCTGGTAAAGAAGCTCAGCATTATCAAGAAACACTGCGTTCTGCAATGTTCAGAACTGACAGGATTTCTTCTCCCTC AACCACACCTCCCAAACCAATAGCAAGGAAAGCAGCAGCAAGAGTTGGAAGAGCTAGGACTTCTGCAGGGCTTCTCAGAACTTTGGTCACTTGTGGATCA AAATCCATAAGGTGA
AA sequence Show only first row Show all	>Lus10003286 pacid=23169857 polypeptide=Lus10003286 locus=Lus10003286.g ID=Lus10003286.BGIv1.0 annot-version=v1.0 MEYVGRIELTTPRRYHNHMENLTPPHQNLVDYLDQNSALHSLEFMNIRTDLKIVTKRKAAVVYHISRNGHLEHPHFLEVPISSFKGLYLRDVISALNSIR GPGMANLYSWSAKRSHGKGFVWKDLSEKDLIRPYNDDDVDEQYILKGSPVPELSPWNLMRSPDDTLTSSTSKHTSGSSGSLTDEFDSPVIRRKSFRRSTF KDVDDPETDNEKPHKTSTAEIKELDSGFSTPRNNGIAKKVDAGKEAQHYQETLRSAMFRTDRISSPSTTPPKPIARKAAARVGRARTSAGLLRTLVTCGS KSIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59790			Domain of unknown function (DU...		Lus10003286 [exp]	0	1
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	4.2	0.9455
AT1G30190			unknown protein		Lus10023301 [exp]	6.7	0.9321
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	7.5	0.9079
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	9.1	0.9368
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	10.0	0.9304
AT5G65010		ASN2	asparagine synthetase 2 (.1.2)		Lus10031300 [exp]	10.5	0.8834
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	11.4	0.9140
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10032332 [exp]	12.8	0.9104
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	14.1	0.9261
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004673 [exp]	14.1	0.9080

Compare expression of checked genes

Lus10003286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.