Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55340 290 / 2e-90 PHIP1 phragmoplastin interacting protein 1 (.1) AT5G50250 81 / 2e-16 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 76 / 7e-15 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G19350 74 / 5e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 71 / 3e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52380 71 / 4e-13 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT1G60000 68 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G16940 66 / 3e-11 Splicing factor, CC1-like (.1.2.3) AT3G18610 66 / 3e-11 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1) AT1G11650 63 / 2e-10 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030327 [exp] 819 / 0 AT3G55340 275 / 9e-85 phragmoplastin interacting protein 1 (.1) Lus10017026 [exp] 89 / 9e-19 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017403 [exp] 82 / 7e-16 AT3G18610 216 / 5e-59 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10010202 [exp] 80 / 3e-15 AT3G18610 218 / 9e-60 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10030194 [exp] 76 / 4e-15 AT1G01080 207 / 2e-66 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10029372 [exp] 72 / 2e-13 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10035678 [exp] 71 / 4e-13 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002222 [exp] 71 / 4e-13 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10018345 [exp] 71 / 9e-13 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209701 [exp] 371 / 6e-124 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.012G090200 [exp] 83 / 4e-17 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 79 / 3e-16 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 80 / 4e-16 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G141300 [exp] 74 / 2e-14 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G068300 [exp] 72 / 2e-13 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.009G137200 [exp] 72 / 3e-13 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G017200 [exp] 72 / 3e-13 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G128100 [exp] 72 / 4e-13 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.014G034600 [exp] 70 / 2e-12 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10003287 pacid=23169854 polypeptide=Lus10003287 locus=Lus10003287.g ID=Lus10003287.BGIv1.0 annot-version=v1.0 ATGGTGTTATCAAACAAGAAGCTCAAGCAGAAGCTCAGGGAAGCTAAATCAGAATCTATAGCTTCATCAATATCCGGCGAAGCCATATCCCAATCTAACG GGAAACCAGATACGATTTTGGAGCTTCAAGAGCGTCTGGATGCAGCAAAACAGAAGACGCGGCTCGTGAAGAAGGACAAGAGATTAAGTTCGCGAGGGCC AGAGAATGAAGACAAGGGTTCAGTCAATGGGAAGAACGAACGAAATAAGAACAATGATAAGGAGAGTGTGGATGGGAAGAAGAGGAAGAGGGAGGAGGAG CATAGCACTGATAAGGTGGAAAAGAAGGCTAACATGACAAAGAAGAAGAAGAAGAAGAAGAAGAGCAAAGTTAAGAACAAGAAGAGCAAGGAAAATGCAA ATGGCGTGGTTGATAAGGAGAAAGTGGTCATTGATGGTGTTGAGAGCAAAGAAGAAATGCCAGTAAATGTTGAAAGCTTGGTGATTAAGGACATTGCTAC AAAAGTTTATGTTGGCGGGATTCCGTACTACTCAACCGAAGATGACATAAGGAGTTTCTTTGATAGCTGTGGCACCATTACAGAAGTTGACTGTATGAAG TTCCCTGATAGTGGAAAGTTTAGAGGAATTGCCATCATCAATTTCAAGACTGACGCTGCTGCTAAGAGGGCCTTGGACCTTGATGGAGCTGACATGGGTG GATTTTTTCTGAAGGTCAAGCCTTATAGTTTTAATAAGACAACTCAACAAACTAAAGTCCCTGATTTTGTTCCCCAAGTTGTAAAGGGTTACAACCGGAT TTACGTTGGGAACTTGTCATGGGATATAACAGAAGAAAACCTCAGACACTTTTTTGCAGATTGTAAGATATCATCGATCCGTTTTGGTACGGACAAAGAA ACAGGAGATTTCCGAGGTTACGGGCATGTAGATTTTAGTGATGATGTCTCAATGATGATGGCACTGAAGATGGATCAGCAGATTGTGTGTGGGAGACCAA TCAAGATCAGCTGTGCAGTTCCTAAGAAAGCAGCAGATGCCCAGACCATCCCGAGAGCAACAATCGAGGAAGCAAGTAAGCCTGAGGTTGATTCTACTCC CATCACGATCCCTATGACTAACGAAGCCCGCCACGATGACAAGCTCTCCACAATTTCTACGGCTGAAGTTGTAAGAAATGAAGCCAGTAGTATTGAAGCA CCGGTTCCGGTTAGCGAAGCCAGTAGTATTGAAGCACCGGTTCCATCTAGTGGTAAGATAAAGAGGAGGACCTGCTATGAATGTGGAGAGAAGGGTCATA TCTCATCAGCCTGCCCGAATAAGCAAAATACTGATGTTACAAATCCCAGTGCAAATAATGTCTCAATGATGTCACAGAAGATGGATCAGCAGGCAGACGC TCGTACCATGGCTGGCCCGAGAACAACATTTGAGGAAGCAAGTAAGCCTGAGGTTGGTTCAACTCCTATAATTGGCAAAGCCCGCCGTTATGATGAGTTC CCCACAATGTCTACTGCCGAAGTTGTAAGAATTGAAGCCAGTAGTATTGACGCACCGGTTCCATCTAGTGGTAAGATAAAGAGGAGGACCTGCTATGAAT GTGGTCAAAAGGGTCATATCTCAACAGCTTGCCCAAATAAGCAAAATACTGATGTTACGATTGCCAGTATGGATTGA
AA sequence Show only first row Show all	>Lus10003287 pacid=23169854 polypeptide=Lus10003287 locus=Lus10003287.g ID=Lus10003287.BGIv1.0 annot-version=v1.0 MVLSNKKLKQKLREAKSESIASSISGEAISQSNGKPDTILELQERLDAAKQKTRLVKKDKRLSSRGPENEDKGSVNGKNERNKNNDKESVDGKKRKREEE HSTDKVEKKANMTKKKKKKKKSKVKNKKSKENANGVVDKEKVVIDGVESKEEMPVNVESLVIKDIATKVYVGGIPYYSTEDDIRSFFDSCGTITEVDCMK FPDSGKFRGIAIINFKTDAAAKRALDLDGADMGGFFLKVKPYSFNKTTQQTKVPDFVPQVVKGYNRIYVGNLSWDITEENLRHFFADCKISSIRFGTDKE TGDFRGYGHVDFSDDVSMMMALKMDQQIVCGRPIKISCAVPKKAADAQTIPRATIEEASKPEVDSTPITIPMTNEARHDDKLSTISTAEVVRNEASSIEA PVPVSEASSIEAPVPSSGKIKRRTCYECGEKGHISSACPNKQNTDVTNPSANNVSMMSQKMDQQADARTMAGPRTTFEEASKPEVGSTPIIGKARRYDEF PTMSTAEVVRIEASSIDAPVPSSGKIKRRTCYECGQKGHISTACPNKQNTDVTIASMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10003287 [exp]	0	1
AT5G27120			NOP56-like pre RNA processing ...		Lus10033846 [exp]	1.4	0.8483
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	3.5	0.8045
AT5G21140		EMB1379	embryo defective 1379 (.1)		Lus10019555 [exp]	4.9	0.7847
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	7.7	0.8016
AT1G05730			Eukaryotic protein of unknown ...		Lus10027051 [exp]	11.8	0.7719
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038284 [exp]	13.0	0.7509
AT1G09830			Glycinamide ribonucleotide (GA...		Lus10005561 [exp]	15.8	0.7562
AT5G22790		RER1	reticulata-related 1 (.1)		Lus10043364 [exp]	20.8	0.7553
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10015029 [exp]	21.8	0.7875
AT4G12060			Double Clp-N motif protein (.1...		Lus10031116 [exp]	26.1	0.7776

Compare expression of checked genes

Lus10003287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.