Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55330 267 / 9e-91 PPL1 PsbP-like protein 1 (.1) AT2G39470 137 / 1e-39 PnsL1, PPL2 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) AT3G05410 66 / 9e-13 Photosystem II reaction center PsbP family protein (.1.2) AT5G11450 57 / 2e-09 PPD5 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT1G06680 56 / 4e-09 PSII-P, OEE2, PSBP-1, OE23 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) AT4G15510 54 / 1e-08 Photosystem II reaction center PsbP family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030326 [exp] 451 / 1e-162 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10023436 [exp] 156 / 4e-47 AT2G39470 255 / 3e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10040314 [exp] 155 / 6e-47 AT2G39470 254 / 5e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10000352 [exp] 58 / 7e-10 AT4G15510 309 / 4e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10029903 [exp] 56 / 5e-09 AT3G05410 286 / 2e-97 Photosystem II reaction center PsbP family protein (.1.2) Lus10000614 [exp] 54 / 2e-08 AT4G15510 308 / 9e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10022110 [exp] 52 / 1e-07 AT5G11450 340 / 2e-117 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10020717 [exp] 47 / 4e-06 AT1G06680 380 / 2e-134 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Lus10016419 [exp] 44 / 5e-05 AT3G63540 243 / 1e-82 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210200 [exp] 331 / 9e-116 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1) Potri.008G050300 [exp] 192 / 2e-61 AT3G55330 164 / 8e-51 PsbP-like protein 1 (.1) Potri.010G210000 [exp] 145 / 5e-43 AT2G39470 278 / 3e-95 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Potri.005G010700 [exp] 60 / 1e-10 AT4G15510 319 / 4e-110 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.013G006500 [exp] 58 / 7e-10 AT4G15510 306 / 5e-105 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.009G062500 [exp] 49 / 9e-07 AT3G63540 240 / 1e-81 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.005G206700 [exp] 46 / 9e-06 AT1G06680 400 / 2e-142 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Potri.002G055700 [exp] 42 / 0.0002 AT1G06680 382 / 3e-135 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Potri.002G072400 [exp] 40 / 0.0007 AT1G77090 345 / 2e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10003289 pacid=23169852 polypeptide=Lus10003289 locus=Lus10003289.g ID=Lus10003289.BGIv1.0 annot-version=v1.0 ATGGCTTCCCTCCAAAACTCACCTTCCCTCTATCGTACATTGTCTTTCTTCCCCCACCAGCAGCTAGGAGGATTACAGAAGCAGCAGCAAACAACGATTC CCAACTGTGGGAAAGGAATTTCGTTTCTTATTCGAGCCCAGCAACCATCTCTTAGTGAGTTCTCTATTTCAATCCCTTTGGGTAGACGCCAATTGGTGGG TGTTGGGATCATTGCTCCTCTAGTTTCTCTGGCGGAACAGACTTCCACTTCATTTGCTGCAGAAAACAAGAAAGGGTTCCTCTCCGTAACGGACCAGAAG GATGGATACTCATTCCTTTACCCCTTTGGTTGGCAAGAAGTGGAGATTCAAGGACAAGATAAAGTGTTCAAAGATGTGATTGAGCCACTAGAAAGTGTCA GTGTAACCATGTTCCCGACTAGCAAGCTAGATATTCGAGATTTCGGCCCACCGGACCAGGTTGCAGGAACTCTGATAAAAAAGGTTCTGGCTTCTCCTAC TCAGAAGACAAAGCTCATCCAGGCTAAAGAGCAAGATGTAGAAGGAAGAGCTTACTACACATTTGAGTTCGTTGCTCAGGCTCCCAACTTCACCCGTCAC GCTCTCAGCGCAATTGTTATCGGCAATGGAAAGCTATACACTTTGACAACTGGAGCCAAAGAAAGAAGATGGGAGAAGATGAAGGATAAATTGCAGACGA TCGTGGAATCCTTCAAAGTTGTCAACGTCTGA
AA sequence Show only first row Show all	>Lus10003289 pacid=23169852 polypeptide=Lus10003289 locus=Lus10003289.g ID=Lus10003289.BGIv1.0 annot-version=v1.0 MASLQNSPSLYRTLSFFPHQQLGGLQKQQQTTIPNCGKGISFLIRAQQPSLSEFSISIPLGRRQLVGVGIIAPLVSLAEQTSTSFAAENKKGFLSVTDQK DGYSFLYPFGWQEVEIQGQDKVFKDVIEPLESVSVTMFPTSKLDIRDFGPPDQVAGTLIKKVLASPTQKTKLIQAKEQDVEGRAYYTFEFVAQAPNFTRH ALSAIVIGNGKLYTLTTGAKERRWEKMKDKLQTIVESFKVVNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10003289 [exp]	0	1
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	3.0	0.9335
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10023191 [exp]	5.1	0.9210
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10043418 [exp]	6.6	0.8851
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Lus10028569 [exp]	8.4	0.9019
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10031981 [exp]	8.8	0.9101
AT2G17972			unknown protein		Lus10013879 [exp]	10.5	0.8896
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10042346 [exp]	10.7	0.9089
AT4G32915			unknown protein		Lus10037623 [exp]	11.3	0.8197
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10016037 [exp]	12.0	0.8941
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015112 [exp]	12.2	0.9019

Compare expression of checked genes

Lus10003289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.