Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55280 187 / 6e-62 RPL23A2, RPL23AB RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) AT2G39460 184 / 1e-60 RPL23A1, RPL23AA, ATRPL23A RIBOSOMAL PROTEIN L23A1, ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ribosomal protein L23AA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030325 [exp] 224 / 3e-76 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10023438 [exp] 221 / 2e-75 AT3G55280 206 / 4e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040316 [exp] 215 / 3e-72 AT3G55280 202 / 2e-67 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005441 [exp] 210 / 2e-70 AT3G55280 208 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10004942 [exp] 209 / 2e-70 AT3G55280 207 / 7e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005883 [exp] 206 / 2e-69 AT3G55280 205 / 7e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040865 [exp] 210 / 5e-65 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10025302 [exp] 88 / 1e-22 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10024430 [exp] 87 / 2e-22 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027000 [exp] 208 / 3e-70 AT3G55280 199 / 2e-66 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.010G210300 [exp] 204 / 1e-68 AT3G55280 195 / 7e-65 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.008G050200 [exp] 204 / 2e-68 AT3G55280 187 / 8e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.016G079800 [exp] 203 / 3e-68 AT3G55280 187 / 5e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.006G213300 [exp] 200 / 1e-66 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [flax] [poplar] Ribosomal_L23 Ribosomal protein L23 PF03939 [flax] [poplar] Ribosomal_L23eN Ribosomal protein L23, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003290 pacid=23169867 polypeptide=Lus10003290 locus=Lus10003290.g ID=Lus10003290.BGIv1.0 annot-version=v1.0 ATGGCCCCTAAAGGTGATGTTACAAAAAAGGCTGATCCCAAGGCTCAAGCCGCAAAGGCGGCTAAGGCTGTGAAATCAGGGCCAACATTCAAGAGGAACC CAAAGAAGATAAGGACAAAGGTTACATTTCACCGCCCAAGGACTCTGAAGAAAGAAAGGAACCCAAAGTATCCACGTATCAGTGCAACTCCCAGGAACAA GCTTGACCATTACCAGATTTTGAAGTTCCCACTTACAACTGAATCTGCAATGAAGAAGATTGAGGACAATAACACCTTGGTTTTCATTGTTGACATCCGT GCTGATAAGAAGAAGATCAAGGATGCCGTCAAGAAGATGTACGATATTCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGAACCAAGAAGGCCT ACGTGAGGTTGACCCCGGATTATGATGCTTTGGATGTGGCCAACAAGATTGGGATCATCTAA
AA sequence Show only first row Show all	>Lus10003290 pacid=23169867 polypeptide=Lus10003290 locus=Lus10003290.g ID=Lus10003290.BGIv1.0 annot-version=v1.0 MAPKGDVTKKADPKAQAAKAAKAVKSGPTFKRNPKKIRTKVTFHRPRTLKKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIR ADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10003290 [exp]	0	1
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	1.4	0.9272
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10040316 [exp]	2.4	0.9120
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012883 [exp]	6.7	0.8737
AT5G57120			unknown protein		Lus10001627 [exp]	6.9	0.8768
AT5G60030			unknown protein		Lus10023334 [exp]	8.0	0.8638
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10036911 [exp]	8.4	0.8807
AT5G45590			Ribosomal protein L35 (.1)		Lus10010406 [exp]	8.7	0.9015
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10007860 [exp]	10.5	0.8703
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10013522 [exp]	13.7	0.9100
AT3G07590			Small nuclear ribonucleoprotei...		Lus10025186 [exp]	15.2	0.8509

Compare expression of checked genes

Lus10003290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.