Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55270 664 / 0 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT3G06110 95 / 2e-22 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G23610 93 / 3e-21 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT5G23720 79 / 9e-15 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT2G04550 65 / 2e-11 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT3G01510 47 / 4e-05 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030324 [exp] 1458 / 0 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10006229 [exp] 519 / 3e-173 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 514 / 1e-171 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10021940 [exp] 91 / 1e-20 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 80 / 1e-17 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 79 / 2e-16 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10032545 [exp] 82 / 1e-15 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10043195 [exp] 81 / 4e-15 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10000921 [exp] 72 / 2e-13 AT2G04550 322 / 1e-111 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210900 [exp] 977 / 0 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 800 / 0 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.010G033000 [exp] 88 / 9e-20 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.012G105800 [exp] 83 / 6e-16 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.015G105000 [exp] 81 / 2e-15 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.014G160500 [exp] 67 / 6e-12 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.006G040300 [exp] 59 / 6e-09 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 59 / 9e-09 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.001G349000 [exp] 46 / 0.0001 AT3G01510 775 / 0.0 like SEX4 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10003291 pacid=23169850 polypeptide=Lus10003291 locus=Lus10003291.g ID=Lus10003291.BGIv1.0 annot-version=v1.0 ATGGTGAAGAAAGAGGATGGCCCCAGTAATCCTCTTCCGCCGTGCCAAATTCCTCCTGCTGGCGGGCGCAAAATGTTCTGGCGCTCTGCATCCTGGTCCT CTTCCAGGACAGCGCTTCAAAATCCTGGAAGTGAGGAGGACGGTGGCATGGATCCCAATGGAAACAATATTGGCAGCGGTGATCTTGGGCAAAATTGGCA TTATCCTGCTCCCTTTACTCCAAGGTCTCAAAAAAGCAGTAAAGCACGGGCCTGTTTACCACCTTTGCAACCTTTGTCAATTGCACGAAAGAGTTTGGAT GAGTGGCCTAAAGCAGGTGGCGATGATTTGGGTGTGTGGCCAATGCCATCGACTCCTAGTGGTAGCAAGACTGGTGATAGATTGAAACTGGATTTGTCAT CGATTGAAAGAAGCCAGGATAGAAATTGTGGGTCAGTGAAGAGAGATAGGATTGCGGTGTACGATAAAGAATGCTCCAAAGTAGCGGATCATGTCTATCT TGGTGGAGATGCTGTGGCTAAGGATAAGGAGATTTTGAAGAAGAATGGGATTACCCATGTACTAAATTGTGTTGGGTTTGTTTGTCCCGAGTACTTCAAG GCGGACTTTGTGTATATGACATTGTGGTTGCAGGACAGTCCATCAGAGGATATAACAAGCATTCTGTATGATGTTTTTGATTACTTTGAGGACGTTAGGG AACATTGTGGGAGAGTTTTCGTGCACTGTTGCCAAGGGGTTTCACGGTCCACTTCTTTGGTAATTGCATATCTTATGTGGAGAGAGGGTCAGAGTTTCGA TGATGCATTTCAATACGTTAAGTCAGCAAGAGGTATTGCCGATCCAAATATGGGCTTTGCTTGTCAGTTGCTACAGTGCCAAAAGAGGGTTCATGCTTTT CCATTAAGTCCAAGTTCATTATTGAGAATGTATAGAATGGTCCCTCATTCACCTTATGATCCTTTGCACCTGGTCCCAAGAATGTTGAATGATCCGTTAC CATCTGCTCTTGATTCTAGAGGTGCCTTCATCATTCACATACCCTCCTCAATGTATCTTTGGGTGGGTAAGAATTGTGAACCCATTATGGAAAGAGATGC AAGAGGTGCTGTTGGCCAGATTGTTCGATATGAGAGGGCTCAGGGTCCAATAATAGCTGTCAAAGAAGGAGAAGAGCCGCCATATTTTTGGGATGCTTTT TCAAATTATTTACCTCTCATGGATAGATCGCGCAGGGGATTAGATGCTGAGTCATCTAAGATTTCCCCAGGTGACAGAAGAGTTGATGCGTATAATGTTG ACTATGAGATTTTCAAGAAGGCTATCAAAGGTGGTATTGTGCCTCCTTTTTCTTCATCTGAGAATGCACATGAAACCCGTCTCCCTACTAGAGAAAGTAG CTGGAGTTTGCTGAGGAGAAAGTTTGCTCAGGTTGATATGAAAGAGTTCGTCTCTGCCCCCAGGATATTTCTATCTCGCGTATATTCAGATTCTATGATG ATTGTGCATTCATCATCACCTTCATACTCTTCATCAGTGTCATCTTCGTCTTCTTCACCTCCTTATACCTCTCCAGATTCCATCTCTTCCTCTGATTCCA GCACTAACTCGAGGTTTTCTGAAGCATCTCCTAATTCTCCATCAGTACCCTCTTCTTCTCTGCCCGTGTCTTCTACTTTGTCTAACTTTTGTGACTTGAC TCTTTCACCAAGGAAACCTTCAGTTCAACTGTCCCTTAACAGCCACGGGCCTGATGGCCAGGGCATTAGCATTGAATCAAAAATGGGTTCACATGTGGTG GCATCACCATCTAAAAAGTCATTACCTTCACTGGCAGAGCGTAGAGGGGGCTTGTCAAAATCATTGAAGTTGCCAGTGGTAAGTGATGATGTTGCCAATG TGGCAGCTGGTTCTCATTCAAGTACAGATGATACCAGGTTGAATACCAATGGATTTTCTTGGTGTGTTTCAGATAGTGTAGAACTTGTTTTAGTGTCCAA AGATGATGATAATGTAGGTGAGGTTTCAGCTCCATTGTCTACTTCAAGTACAGACAATATAGTTACCCCTAACTTGTCTAACAAGGAAGCTGCTTTTGTA AATGCTTGTGATGAACATGGTGGAAAGAATCCTGACTGCAGCACCGAGAATTCCAGGAAGGAAGCTGTGTCTGCATCACCTGGCCTAATACAACCTCTTG CATACCGCTGGCCCAGTTTAGAGAGGATTTCACCATTTCGTGCCAATAGTCTGGTTTCTAAGGGAGCTTTTGCAGTACTGATGTCTCCTTCTGGAATAGA TAGAGATGTAAAGAGAATTCTGTACTTCTGGATAGGAAAGTCATTTACTTGTGGCGAGAGCTTGAATCAGTTAGAAGGCAGCCCAGAATTTATGGATGTA CGAGATATTGACTGGGATGAGGTTGGTTGTCATTTTATAACTCATTTGGGTCTTCAAATGGACAGTCCTAGTAAGGTGAAGGTAGTCAAGGAAGGAGAAG AACCGGCTGAGTTTCTTGCAATGTTGAATAATGATTTGTAG
AA sequence Show only first row Show all	>Lus10003291 pacid=23169850 polypeptide=Lus10003291 locus=Lus10003291.g ID=Lus10003291.BGIv1.0 annot-version=v1.0 MVKKEDGPSNPLPPCQIPPAGGRKMFWRSASWSSSRTALQNPGSEEDGGMDPNGNNIGSGDLGQNWHYPAPFTPRSQKSSKARACLPPLQPLSIARKSLD EWPKAGGDDLGVWPMPSTPSGSKTGDRLKLDLSSIERSQDRNCGSVKRDRIAVYDKECSKVADHVYLGGDAVAKDKEILKKNGITHVLNCVGFVCPEYFK ADFVYMTLWLQDSPSEDITSILYDVFDYFEDVREHCGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKSARGIADPNMGFACQLLQCQKRVHAF PLSPSSLLRMYRMVPHSPYDPLHLVPRMLNDPLPSALDSRGAFIIHIPSSMYLWVGKNCEPIMERDARGAVGQIVRYERAQGPIIAVKEGEEPPYFWDAF SNYLPLMDRSRRGLDAESSKISPGDRRVDAYNVDYEIFKKAIKGGIVPPFSSSENAHETRLPTRESSWSLLRRKFAQVDMKEFVSAPRIFLSRVYSDSMM IVHSSSPSYSSSVSSSSSSPPYTSPDSISSSDSSTNSRFSEASPNSPSVPSSSLPVSSTLSNFCDLTLSPRKPSVQLSLNSHGPDGQGISIESKMGSHVV ASPSKKSLPSLAERRGGLSKSLKLPVVSDDVANVAAGSHSSTDDTRLNTNGFSWCVSDSVELVLVSKDDDNVGEVSAPLSTSSTDNIVTPNLSNKEAAFV NACDEHGGKNPDCSTENSRKEAVSASPGLIQPLAYRWPSLERISPFRANSLVSKGAFAVLMSPSGIDRDVKRILYFWIGKSFTCGESLNQLEGSPEFMDV RDIDWDEVGCHFITHLGLQMDSPSKVKVVKEGEEPAEFLAMLNNDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	0	1
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	2.4	0.8817
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	4.2	0.8762
AT3G45830			unknown protein		Lus10018121 [exp]	4.4	0.8836
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10033263 [exp]	5.0	0.8729
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	5.5	0.8717
AT5G58190		ECT10	evolutionarily conserved C-ter...		Lus10027582 [exp]	6.0	0.8316
AT5G19420			Regulator of chromosome conden...		Lus10009701 [exp]	7.7	0.8605
AT1G20460			unknown protein		Lus10021826 [exp]	9.2	0.8028
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	9.9	0.8712
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10017353 [exp]	12.2	0.8441

Compare expression of checked genes

Lus10003291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.