Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55260 781 / 0 HEXO1, ATHEX2 beta-hexosaminidase 1 (.1) AT1G65590 537 / 0 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1) AT1G05590 220 / 6e-64 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030323 [exp] 1209 / 0 AT3G55260 772 / 0.0 beta-hexosaminidase 1 (.1) Lus10022251 [exp] 335 / 5e-107 AT1G65590 564 / 0.0 beta-hexosaminidase 3 (.1) Lus10007899 [exp] 213 / 3e-61 AT1G05590 746 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10030348 [exp] 208 / 4e-59 AT1G05590 748 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G211000 [exp] 812 / 0 AT3G55260 815 / 0.0 beta-hexosaminidase 1 (.1) Potri.008G079400 [exp] 524 / 0 AT1G65590 781 / 0.0 beta-hexosaminidase 3 (.1) Potri.001G232800 [exp] 216 / 3e-62 AT1G05590 796 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.001G232600 [exp] 211 / 2e-60 AT1G05590 798 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.008G049801 [exp] 114 / 3e-30 AT3G55260 108 / 6e-29 beta-hexosaminidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0546 [flax] [poplar] Hexosaminidase PF02838 [flax] [poplar] Glyco_hydro_20b Glycosyl hydrolase family 20, domain 2 CL0058 [flax] [poplar] Glyco_hydro_tim PF00728 [flax] [poplar] Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10003292 pacid=23169860 polypeptide=Lus10003292 locus=Lus10003292.g ID=Lus10003292.BGIv1.0 annot-version=v1.0 ATGAAGAACAACAACCCATATCCTCCGATCATCACTTTACTCTTCGCCCTCTTCCCACTCCTCTCTTTTACCTCTGCCGCCGGAGTCGACGCCGGCAGTA CCCTCACTTACCTGTGGCCTCTCCCTGCTGAGTTCAATTCCGGCGCCCAGACTATCTCCGTTGACCCTAACCTGGCCCTCGTCGCTGCTGGTAACGGACG CAAGTCGGCGATCCTCAAGGATTCCTTTGATAGGTACAAGGAGATCATATTCAAGCATGGGAGCAGCGGGACTCGGAGGAGCTCATTGGCATTGGAGAGA TTCGGAGGTCGCAAGGGGAAACGATCGGACGGTTACGACGTTGCCGGGTTGAAAATCGTGGTGCATTCTGATAGCGAAGTGCTTGAGCTTGGAGTGGATG AGAGCTATACGTTATTTATAGGCAAGAGCGATGGACAGTCTATTATTTGGGAAGCAAATATCGAGGTGAAAATATCAAAGAATTGGACTTCTCAGCTTCT TTGTTCATGTGATGTTGATTTCTCATCACTCGTACAGGCAAATACCGTTTATGGGGCAATGCGCGGTTTAGAGACTTTTAGCCAGCTGTGTATATTTGAC TATGAAACTAAATCTGTAAAAATACACGAGGCTCCATGGTTTATTCGAGATAAACCAAGGTTCAGTTACCGGGGGCTGATGATTGATACATCAAGGCACT TTCTTCCGACTAATGTTATCAAGCAGATCATTGAATCCATGTCCTATGCTAAATTTAATGTCCTACATTGGCACATCATAGACGAGCAGTCGTTTCCTTT GGAGGTGCCAACATATCCAAATTTGTGGAAAGGTTCATACTCACAATGGGAGCGCTACACTGTTGAAGACGCATATGAGATTGTTAATTTGAGTCTTGAA ATTGAAGGTTTGGATTTAGAGTGCAAGGAATTTGAACTTGTGACAGGGATGGTGCAAACAATTATTTCCACTGCTCGGTTTTTGCAAAGCATTAATGTGA TGGCAGAAGTAGATGTCCCTGGTCATGCAGAATCATGGGGCGTTGGATATCCTGATCTTTGGCCTTCTTCTTCCTGTAGAGAGCCACTGGATGTTACAAA GAATTATACCTTCGATGTGATATCTGGAATTCTGTCAGACATGAGGAAAATTTTCCCTTTCGGGCTCTTCCACTTGGGTGGCGATGAAGTCAACACGGAT TGCTGGAGCTCCACTCCTCATGTGAAGAAATGGCTGGCGGAGCGAAACATGACTACAAAAGATGCATATAAGTATTTTGTACTCAAAGCTCAAGAAATAG CAATTTCAAAAGGTTGGACCCCAGTCAACTGGGAAGAAACATTCAACACATTTCCATCAAGTCTCAATCCAAAGACCATAGTGCATAATTGGTTGGGTGG AGGAGTTTGTTCAAAGGCCGTTGATAAAGGTTTTAGATGCATCTTTAGCAATCAAGGTTTCTGGTACCTTGATCACTTAGATGTTCCTTGGGAGGAAGTT TATACAGCAGATCCAGTTGAAGGAATATATGACTCCACCAAGCAGAAGCTTGTTATAGGTGGAGAAGTCTGCATGTGGGGCGAAACTGCTGATACTTCCG CTGTCCAGCAAACAATTTGGCCTCGAGCAGCAGCTGCTGCAGAACGATTATGGAGCAAGAAAGAGGACATATCTGGAAACATAACGGTAACTGCATTGCC GCGGCTGCACTACTTCAGATGCCTGTTGAATCGGCGTGGGGTTGCAGCTGCTCCGCTCTCAAATGCATATGCTCGGCAGCCTCCAACTGGCCCAGGTTCA TGCTATGTACAGTGA
AA sequence Show only first row Show all	>Lus10003292 pacid=23169860 polypeptide=Lus10003292 locus=Lus10003292.g ID=Lus10003292.BGIv1.0 annot-version=v1.0 MKNNNPYPPIITLLFALFPLLSFTSAAGVDAGSTLTYLWPLPAEFNSGAQTISVDPNLALVAAGNGRKSAILKDSFDRYKEIIFKHGSSGTRRSSLALER FGGRKGKRSDGYDVAGLKIVVHSDSEVLELGVDESYTLFIGKSDGQSIIWEANIEVKISKNWTSQLLCSCDVDFSSLVQANTVYGAMRGLETFSQLCIFD YETKSVKIHEAPWFIRDKPRFSYRGLMIDTSRHFLPTNVIKQIIESMSYAKFNVLHWHIIDEQSFPLEVPTYPNLWKGSYSQWERYTVEDAYEIVNLSLE IEGLDLECKEFELVTGMVQTIISTARFLQSINVMAEVDVPGHAESWGVGYPDLWPSSSCREPLDVTKNYTFDVISGILSDMRKIFPFGLFHLGGDEVNTD CWSSTPHVKKWLAERNMTTKDAYKYFVLKAQEIAISKGWTPVNWEETFNTFPSSLNPKTIVHNWLGGGVCSKAVDKGFRCIFSNQGFWYLDHLDVPWEEV YTADPVEGIYDSTKQKLVIGGEVCMWGETADTSAVQQTIWPRAAAAAERLWSKKEDISGNITVTALPRLHYFRCLLNRRGVAAAPLSNAYARQPPTGPGS CYVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10003292 [exp]	0	1
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10028257 [exp]	2.4	0.7016
AT2G32980			unknown protein		Lus10035310 [exp]	9.9	0.6527
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10026984 [exp]	12.4	0.6342
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10036481 [exp]	17.0	0.6861
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10002832 [exp]	28.3	0.6231
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	30.5	0.6666
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10008460 [exp]	31.7	0.5975
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10041592 [exp]	34.6	0.6462
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	38.2	0.6626
AT1G12310			Calcium-binding EF-hand family...		Lus10032205 [exp]	39.2	0.6124

Compare expression of checked genes

Lus10003292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.