Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39435 115 / 2e-27 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) AT3G53540 84 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030320 [exp] 1037 / 0 AT2G39435 99 / 6e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Lus10024434 [exp] 108 / 2e-24 AT3G53540 449 / 2e-144 unknown protein Lus10025296 [exp] 103 / 1e-22 AT3G53540 456 / 7e-146 unknown protein Lus10040814 [exp] 54 / 2e-07 AT5G02390 129 / 4e-31 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G211700 [exp] 274 / 8e-82 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Potri.016G080200 [exp] 128 / 6e-31 AT3G53540 234 / 1e-64 unknown protein Potri.006G213700 [exp] 127 / 1e-30 AT3G53540 433 / 1e-136 unknown protein Potri.009G030700 [exp] 62 / 9e-10 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G239500 [exp] 56 / 8e-08 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003295 pacid=23169872 polypeptide=Lus10003295 locus=Lus10003295.g ID=Lus10003295.BGIv1.0 annot-version=v1.0 ATGGAATCCAGGAAGCCTTCTCCAAGTGTTGTTGCAAGGTTGATGGGTTTGCAAGAATTTTCACCTCAACAACCAGTTCAAAAGAAACCAAGAGTACTTT CTGATAAATATATGCAGAGGGTTGGTTCGATAGGTACTAGAGAAAAACATCAACCCCTTGGTTATCTGAACTCCAAGGAGTCCAGGGACTACAATCTGTT GGAGAGTGACACACAAAACAGAAGTTCGTCTCGGAAGAGGAACGCGCAGTTGAGTCCAGAGGTGTCATTTAGTGATTCAAACTACAGAAGCTTTGGTAAT GCTTCGGCACAAAAGAATTCAGCCAAAAGAATTGGGTTTTTCAAAAGAAATATGGGTACTAGAGATGCATTAGGTTCTAAATTCTTAAATAGTGGCAACT CTAGCAGGAAGACTGAGTTAACCACATTGTCTTCCTTCGAGCAAGTTGAATTGGGTATGACCAGAACTACTGATCAAGAACTTATAATTTCTGGTTCTAG AAGCCTTGTTAGCGGCACAGGATTCGAGAAGCATGGTCCTTGCACAGGAAAAAGTAGGCAGTATGGCTGGAAGGTCAGGAGCATTGGATGCTTACGCAGA CCTACACCACTTCACTGGGATCTTGATGCTATCCGCAACCATACACCGAGTAACAACCATGGCTTTGCTAAACATGATGGTAAAGTTTTGGAATTAGGGA TCAAGAAGTCTTCCAACAACTCTGAACAAAGTGCTAGTATTGAAAGTGATGCAGGAACTGAGTTTGTCAATGAATCTCCTTTAGAAATTGATGAACAGTC GTTGGATGAGGAGATTAGGAAATTTCTAGTAAAAGACCATGATGATTCATGTCACGCAATGGATTCTTCGATACAAAAGGATATATGTGTAGGAACATAT GAAAAAGAGTCCATTTCTTCTTATTGCTCGTGCACTGATCCCGAATCTACAGTGAGCTTAGAAGATGTGTATCAATCCAGTCCAATCTCAGTACTGGATG CATCATACAGGAAAGAGAATTCTTCTTGTTCTGACAGTTGGGAGGGTGATGGTGCTTCTCTGCATGGCTGCTTGCAGATGCGACTTGAACTCCTGAAGTC AGAAATATCAGATGTATACTCAGAAGACTTTGACACAATGGTCTCTAGCGAGGGAGATGCTCGAGAAGAATCTGTAGGTGGTGATATTGAACCAGATGCT CTAAAACCGTTCAGGGCTGAAGAGAGCAGGGACTTTTCATACTTGGTTGATGTGTTGAATGACGCTGGAGTACTCAATGGAGGATCATTCCCGGGACTTA ACTCATGGCACTCTGAGGAATGCATAATCGGATTTTCCATCTTTGATACACTAGAGAAGAAGTATGGGGATCAGCCAAATTGGAAGAGAACAGATAGGAG GCTTCTATTTGATCGTATCAACTCAGGGTTACTCGAGATTTTGCAGTCATCCATGACCCAGCACTTTGGGTCAAATACTGTGGCAAGAAGGTTCATCCTC AGCCATGGGCAGGAAGACATTGAAGAGGAGGTGTGGATGTTATTGGCTAGCCAGGAAAAAGGAGTGGAAAAGGATTATGAGAAAGTGTTGGGGAAGGATG ACAAGTGGTTGGACTTGGCAGATCATATACAGGATATCGGTACAGAGATTGCAAATTCTCTGTTTGATGAACTGGTTGAGGATTCTTTTAGCATATAA
AA sequence Show only first row Show all	>Lus10003295 pacid=23169872 polypeptide=Lus10003295 locus=Lus10003295.g ID=Lus10003295.BGIv1.0 annot-version=v1.0 MESRKPSPSVVARLMGLQEFSPQQPVQKKPRVLSDKYMQRVGSIGTREKHQPLGYLNSKESRDYNLLESDTQNRSSSRKRNAQLSPEVSFSDSNYRSFGN ASAQKNSAKRIGFFKRNMGTRDALGSKFLNSGNSSRKTELTTLSSFEQVELGMTRTTDQELIISGSRSLVSGTGFEKHGPCTGKSRQYGWKVRSIGCLRR PTPLHWDLDAIRNHTPSNNHGFAKHDGKVLELGIKKSSNNSEQSASIESDAGTEFVNESPLEIDEQSLDEEIRKFLVKDHDDSCHAMDSSIQKDICVGTY EKESISSYCSCTDPESTVSLEDVYQSSPISVLDASYRKENSSCSDSWEGDGASLHGCLQMRLELLKSEISDVYSEDFDTMVSSEGDAREESVGGDIEPDA LKPFRAEESRDFSYLVDVLNDAGVLNGGSFPGLNSWHSEECIIGFSIFDTLEKKYGDQPNWKRTDRRLLFDRINSGLLEILQSSMTQHFGSNTVARRFIL SHGQEDIEEEVWMLLASQEKGVEKDYEKVLGKDDKWLDLADHIQDIGTEIANSLFDELVEDSFSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	0	1
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	1.4	0.9121
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	1.7	0.8703
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Lus10000776 [exp]	2.4	0.8704
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	3.2	0.8593
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	4.0	0.8668
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10033594 [exp]	5.5	0.8319
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10022621 [exp]	5.7	0.7946
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	7.3	0.8505
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10024607 [exp]	7.5	0.8198
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	9.2	0.8255

Compare expression of checked genes

Lus10003295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.