Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61150 101 / 4e-26 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT5G52170 99 / 3e-25 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G00730 92 / 1e-22 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G04890 86 / 2e-20 HD PDF2 protodermal factor 2 (.1) AT1G05230 86 / 2e-20 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G21750 77 / 2e-17 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G73360 74 / 2e-16 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G79840 69 / 1e-14 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT1G17920 68 / 2e-14 HD HDG12 homeodomain GLABROUS 12 (.1) AT2G32370 67 / 5e-14 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005758 [exp] 142 / 1e-40 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027439 [exp] 130 / 4e-40 AT4G00730 122 / 2e-33 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 140 / 1e-39 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005759 [exp] 135 / 7e-38 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10041361 [exp] 102 / 1e-28 AT3G61150 223 / 6e-69 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10036567 [exp] 103 / 7e-27 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10031933 [exp] 87 / 5e-21 AT3G61150 410 / 1e-133 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10018359 [exp] 86 / 1e-20 AT4G04890 805 / 0.0 protodermal factor 2 (.1) Lus10020059 [exp] 84 / 8e-20 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075200 [exp] 99 / 3e-25 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 99 / 4e-25 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 89 / 1e-21 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.015G034100 [exp] 88 / 3e-21 AT1G73360 927 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.014G152000 [exp] 85 / 3e-20 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.015G141800 [exp] 85 / 3e-20 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G038500 [exp] 83 / 2e-19 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.012G139300 [exp] 82 / 3e-19 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 82 / 5e-19 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 81 / 1e-18 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003296 pacid=23169863 polypeptide=Lus10003296 locus=Lus10003296.g ID=Lus10003296.BGIv1.0 annot-version=v1.0 ATGGTCGTACTCCAGGGTTCGTCGCATGATGCTTCATGGTCGTTGGTGGTGTATGCACCGGTGAGTGTGGCATCAATGGAGATGGTGATGAACGGCAACG AAAACACCTTTGTTGATCTTCTGCCATTTGGATTTGCTATTCTCCCAGATGGGAGAGCCCAACAAAACTTGTCCATGGCAACCACTGAAGGTGTTGGTGA TGGTGGACTGGTCGAGGGAGGCGGATCCATCCTAACAATTGGGGTTCAAATCCTTATCAATGCCCTCTCCATGACCAACTTGACCATCGAGTCTGTGGAC ATGGTGAATAACTTGCTCTTGTGCACTATCCAGCGCATCAGCGATGCCCTCCGATTGATGGCTTGA
AA sequence Show only first row Show all	>Lus10003296 pacid=23169863 polypeptide=Lus10003296 locus=Lus10003296.g ID=Lus10003296.BGIv1.0 annot-version=v1.0 MVVLQGSSHDASWSLVVYAPVSVASMEMVMNGNENTFVDLLPFGFAILPDGRAQQNLSMATTEGVGDGGLVEGGGSILTIGVQILINALSMTNLTIESVD MVNNLLLCTIQRISDALRLMA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003296 [exp]	0	1
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023540 [exp]	1.0	0.9638
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10002803 [exp]	2.0	0.9343
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10042984 [exp]	5.5	0.7404
AT4G35500			Protein kinase superfamily pro...		Lus10035984 [exp]	8.2	0.8715
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	12.2	0.6715
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10010762 [exp]	15.8	0.8884
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10043362 [exp]	16.2	0.6832
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	16.3	0.7144
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	17.4	0.7144
					Lus10002332 [exp]	18.5	0.7144

Compare expression of checked genes

Lus10003296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.