Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036312 [exp] 136 / 3e-35 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10042979 [exp] 132 / 8e-34 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006887 [exp] 117 / 1e-28 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10027612 [exp] 117 / 2e-28 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10001304 [exp] 113 / 2e-27 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10023787 [exp] 107 / 2e-25 ND 44 / 3e-04 Lus10025008 [exp] 105 / 1e-24 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10010590 [exp] 103 / 5e-24 ND / Lus10032730 [exp] 85 / 3e-20 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061550 [exp] 49 / 5e-06 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.015G057300 [exp] 46 / 3e-05 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003298 pacid=23169862 polypeptide=Lus10003298 locus=Lus10003298.g ID=Lus10003298.BGIv1.0 annot-version=v1.0 ATGAGTTCTGAAATTGTTTCTTTAAAAAATCTGCCTCGTGACAAACCTGGGAGTGCCCTATGCCTCCTCTTCTTAAATACATGGAAAGTCAGCAACCCAG CCACGCCTGATCAGCGGTTTGCGTTCGGCATGTTGTGGGTTGATGAAGAGGGGACCATTGTTGAGGGCGCTTCCCATCCGGCTCACACGAACATCCTTAC CTCGAGGCTATTTGTTGGGTTTGTATATAAGATCAAGGAGTTTGGGTTGCAGATGCCTCGAAGAGCCTATCGAGCTGCCACTTTTGATTGCCTTCTGTCT TTTTCTCTTTCCACGATGTTCTATCTCATAACTACTTCCTCTCCGACATTCCCTCTTAACGCGTTTCAGTTCGTAGCGTTTGACAATCTCTTCTGTCGTA CCTACCCATGTCCTTATTTGACTGACGTTATTGGGCACATTGTTTCTGTCTCTAAGAAGAACCATGTTGACGCCATTTCTGGCATAGCTGCAACTCAGGA AATAGTGATTGAAAATGAAAACTTGGTCCCTTTAACTGTTACTTTGTGGTCTGAATTTGCAACTATTCTTGTACCGTCTTCCCTTTCGGCAGCGAATGCG AAGAAACCAGTTGCTATTGCTTTCGGGGGGGCTGCAGATCAAAAGCCACTTATGCGAACTCTTGAACAAAAGGCTCCCTCGATTGCTGCATTAATCCCTT ATGCTTCACAGCCAGATGGTACTGCCACCGTCAACAACTCGACCGATGAACCATCATCTGGTGATCCCTCGAGTGACGCTACCTTGTCTGGTACATTTCA AGTGACATTGAATTGGCCAGTGGTTCAACAAGTCTGGTTGCTTCTCCTGTCTGCTGCAACGGCCTCAAAGAAGAAAGCTGCACCGCGTGCCCGTAAGGCA CGATCCATTTTGAAGTACGTACCTATTACTGCCGACGAGCCATTAGGAACCTGTTTAGCTGATGATGAAGACGATGTTCCACTACATGTTTTTACGCAAC ATGCAAAGGAAGCATCGCCTGCGATGCCTTCGTCTGCGAAGAAAAAACTGTTTGCGTCAACTTAG
AA sequence Show only first row Show all	>Lus10003298 pacid=23169862 polypeptide=Lus10003298 locus=Lus10003298.g ID=Lus10003298.BGIv1.0 annot-version=v1.0 MSSEIVSLKNLPRDKPGSALCLLFLNTWKVSNPATPDQRFAFGMLWVDEEGTIVEGASHPAHTNILTSRLFVGFVYKIKEFGLQMPRRAYRAATFDCLLS FSLSTMFYLITTSSPTFPLNAFQFVAFDNLFCRTYPCPYLTDVIGHIVSVSKKNHVDAISGIAATQEIVIENENLVPLTVTLWSEFATILVPSSLSAANA KKPVAIAFGGAADQKPLMRTLEQKAPSIAALIPYASQPDGTATVNNSTDEPSSGDPSSDATLSGTFQVTLNWPVVQQVWLLLLSAATASKKKAAPRARKA RSILKYVPITADEPLGTCLADDEDDVPLHVFTQHAKEASPAMPSSAKKKLFAST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52950			Nucleic acid-binding, OB-fold-...		Lus10003298 [exp]	0	1
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	1.7	0.8498
AT1G72390			unknown protein		Lus10008132 [exp]	2.4	0.7878
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026377 [exp]	11.2	0.7048
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	11.5	0.7459
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	12.3	0.7320
AT2G39100			RING/U-box superfamily protein...		Lus10034165 [exp]	15.0	0.6941
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10008024 [exp]	16.5	0.6838
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	23.2	0.7062
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10036924 [exp]	27.5	0.6621
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10019169 [exp]	28.6	0.6559

Compare expression of checked genes

Lus10003298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.