Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61150 61 / 9e-12 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G00730 58 / 1e-10 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 52 / 1e-08 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT4G21750 48 / 3e-07 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G04890 48 / 5e-07 HD PDF2 protodermal factor 2 (.1) AT1G17920 48 / 5e-07 HD HDG12 homeodomain GLABROUS 12 (.1) AT2G32370 47 / 5e-07 HD HDG3 homeodomain GLABROUS 3 (.1) AT1G73360 44 / 1e-05 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT5G46880 40 / 0.0001 HD HDG5, HB-7 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005759 [exp] 117 / 3e-31 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027437 [exp] 115 / 8e-31 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027438 [exp] 102 / 4e-28 AT3G61150 95 / 1e-22 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005756 [exp] 87 / 5e-21 AT3G61150 283 / 3e-88 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10011633 [exp] 83 / 2e-19 AT3G61150 160 / 2e-42 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10036567 [exp] 78 / 1e-17 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10014997 [exp] 70 / 1e-14 AT4G00730 559 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 57 / 3e-10 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10006765 [exp] 54 / 2e-09 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G075200 [exp] 81 / 1e-18 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 76 / 6e-17 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 65 / 4e-13 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 65 / 6e-13 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 59 / 4e-11 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G152000 [exp] 57 / 2e-10 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.003G096000 [exp] 50 / 5e-08 AT5G46880 873 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1) Potri.011G025000 [exp] 50 / 5e-08 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 50 / 6e-08 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.001G137800 [exp] 49 / 1e-07 AT5G46880 842 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain
Representative CDS sequence Show only first row Show all	>Lus10003299 pacid=23169865 polypeptide=Lus10003299 locus=Lus10003299.g ID=Lus10003299.BGIv1.0 annot-version=v1.0 ATGGCTGCAATGAATGAGTTGTTCACCATGGTTCAAGCTGATGAACCACTCTGGGTGAAATGCCCTGAACTTGATGGTGGTTATAGGGAAGTGATGAATC TTGACGAGTATGCTCGAATCGTTGTGCCTTCGCTTGGCCTCAAACGTAGTGGCTTCATCACAGAGGCTTTGAGGGCGACTAGTAATGTCATCATCAATAG CTTTACTCTTGTTGAAATTAAAAGAAAACCTTCGGACATGGCCTGCTCTTGGCCTCCAAATCTCTTCGGCCTATCGCCGTTCTTGCTCACAGAGGCTACT GCTGCACCGCTCTACTTTTGTGTCTCCTACGGCTCTGCGGCTGTTGTGGCTGCCAGTACGATGGTGACAGGAAGCGTCGGCCAGGCTTATGAAGAGGCTT CTTGA
AA sequence Show only first row Show all	>Lus10003299 pacid=23169865 polypeptide=Lus10003299 locus=Lus10003299.g ID=Lus10003299.BGIv1.0 annot-version=v1.0 MAAMNELFTMVQADEPLWVKCPELDGGYREVMNLDEYARIVVPSLGLKRSGFITEALRATSNVIINSFTLVEIKRKPSDMACSWPPNLFGLSPFLLTEAT AAPLYFCVSYGSAAVVAASTMVTGSVGQAYEEAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	0	1
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	1.7	0.8803
AT1G52950			Nucleic acid-binding, OB-fold-...		Lus10003298 [exp]	1.7	0.8498
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	2.8	0.8538
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026377 [exp]	3.6	0.7890
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	4.9	0.8268
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10019169 [exp]	5.7	0.7785
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	6.3	0.8276
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022078 [exp]	6.6	0.8310
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	8.1	0.7993
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10008024 [exp]	10.2	0.7552

Compare expression of checked genes

Lus10003299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.