Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61150 57 / 7e-11 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT4G00730 57 / 1e-10 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT5G52170 55 / 5e-10 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G04890 49 / 8e-08 HD PDF2 protodermal factor 2 (.1) AT4G21750 48 / 1e-07 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 47 / 2e-07 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G73360 47 / 3e-07 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 44 / 4e-06 HD HDG12 homeodomain GLABROUS 12 (.1) AT2G32370 38 / 0.0005 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005759 [exp] 105 / 7e-28 AT3G61150 706 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10027437 [exp] 105 / 2e-27 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10005757 [exp] 74 / 3e-17 AT4G00730 155 / 1e-43 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10005758 [exp] 67 / 3e-14 AT3G61150 419 / 3e-137 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10011633 [exp] 66 / 6e-14 AT3G61150 160 / 2e-42 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) Lus10036567 [exp] 60 / 9e-12 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10038877 [exp] 56 / 2e-10 AT4G00730 261 / 6e-83 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10041362 [exp] 56 / 2e-10 AT4G00730 379 / 2e-122 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10006765 [exp] 52 / 5e-09 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141800 [exp] 72 / 6e-16 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 67 / 4e-14 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G075200 [exp] 64 / 4e-13 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 59 / 2e-11 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.011G025000 [exp] 50 / 4e-08 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 48 / 1e-07 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.014G152000 [exp] 46 / 7e-07 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.002G230200 [exp] 46 / 7e-07 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.012G038500 [exp] 45 / 1e-06 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Potri.001G184100 [exp] 43 / 7e-06 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003300 pacid=23169871 polypeptide=Lus10003300 locus=Lus10003300.g ID=Lus10003300.BGIv1.0 annot-version=v1.0 ATGATGAGGCAGCGTTTAAACGATCCACTCTGTAACAATTGCGGTGGCAATGTGATATCTGCAATCGTCAAGCTTGAGCAACAACAACTACGAATCGAGA ATGCTCGTCTCAAGAACAAAATCGATCGCGTATTGTCCTTTTCAACCAGCAAGTTGCTCGGCAAACCTGATATTTTGTCATCAGTCTCCTCCCCAACATA TGCTTCCAATGGTTATGGACCAATCACAAATGTGATTGCACCACTAGTGGGGATTGATTTGGCTGATCCTTGCATGGATACCGGTGTCCGACCTATGATC ATGAGACCAGCATAA
AA sequence Show only first row Show all	>Lus10003300 pacid=23169871 polypeptide=Lus10003300 locus=Lus10003300.g ID=Lus10003300.BGIv1.0 annot-version=v1.0 MMRQRLNDPLCNNCGGNVISAIVKLEQQQLRIENARLKNKIDRVLSFSTSKLLGKPDILSSVSSPTYASNGYGPITNVIAPLVGIDLADPCMDTGVRPMI MRPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003300 [exp]	0	1
					Lus10000363 [exp]	1.7	1.0000
					Lus10003285 [exp]	3.0	1.0000
AT3G10340		PAL4	phenylalanine ammonia-lyase 4 ...		Lus10001405 [exp]	3.2	1.0000
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	4.2	1.0000
					Lus10025781 [exp]	5.0	1.0000
					Lus10004996 [exp]	5.7	1.0000
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	5.9	1.0000
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	8.0	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	9.9	1.0000
AT1G66300			F-box/RNI-like/FBD-like domain...		Lus10023040 [exp]	10.2	0.8324

Compare expression of checked genes

Lus10003300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.