Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55230 201 / 1e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G39430 193 / 1e-56 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G07730 128 / 3e-32 Disease resistance-responsive (dirigent-like protein) family protein (.2) AT2G28670 116 / 1e-29 ESB1 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT3G24020 77 / 1e-15 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G13580 76 / 2e-15 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 42 / 0.0003 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030318 [exp] 301 / 3e-99 AT3G55230 276 / 2e-93 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10006317 [exp] 117 / 5e-29 AT2G28670 271 / 1e-89 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Lus10029585 [exp] 96 / 1e-23 AT2G28670 166 / 6e-53 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Lus10023689 [exp] 77 / 2e-15 AT3G24020 336 / 1e-117 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10011767 [exp] 77 / 2e-15 AT3G24020 339 / 7e-119 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016231 [exp] 46 / 2e-05 AT1G65870 149 / 8e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 45 / 5e-05 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10021083 [exp] 44 / 0.0001 AT1G22900 150 / 5e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 44 / 0.0001 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049100 [exp] 223 / 5e-67 AT2G39430 251 / 6e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.010G211900 [exp] 217 / 7e-65 AT2G39430 249 / 3e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.010G212000 [exp] 183 / 7e-54 AT1G07730 103 / 1e-25 Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.010G211800 [exp] 131 / 5e-34 AT2G28670 257 / 6e-83 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.008G049200 [exp] 124 / 2e-31 AT2G28670 276 / 2e-90 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G174300 [exp] 81 / 9e-17 AT3G24020 315 / 2e-109 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G054100 [exp] 78 / 1e-15 AT4G13580 308 / 3e-106 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G054000 [exp] 74 / 1e-14 AT3G24020 352 / 5e-124 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 49 / 2e-06 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 47 / 1e-05 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10003301 pacid=23169866 polypeptide=Lus10003301 locus=Lus10003301.g ID=Lus10003301.BGIv1.0 annot-version=v1.0 ATGTTCATCTTCTTCTTCTTCATCGCCACAATCATCAACCAGTCCTCCTCAGCTCGAACCATAGCCAACCCAATTCCGCCTCCTAGCAGCCACCACAACC ATCACAAGAATCTCACCTTCTTAATGCAAAACGTCCTGAATGTGACAAAACATCGATCACCAAATCAAGCCACAAAACAGCTAACCACCCAAATCCCATT CCCTAAGCCGCTTGGCATCTTCCCTCCCAGCAAAGGCATCCTTATCCCACAACAAACTTCCAATCTTCAAACTGCTAAGCAAACCCTTGATGACTCTGCC ATTGGCCTCCTCTCATTCCCCGCAGGCAGAGCCACACTGGAGGAACTAGAGGTTGGGAGTGTGACTGAGATAAGTGAGGAGTTGTTTGAGAATTTGAGTT ATGGTCCAGTTGTTGTTGGAAGAGCAGAAGGGGTGTTTGTGGCTGCTAGCTCGGGCGATGACGACAGAACCAACAGCCACATGGTTGCAATGACAGCTAA CTTATTCATTAATGGTGATGATCAGAAGGTTGTTAGTGGAGATGGGTTGAGATTGTTTGGGGTGCATAGTAGTAACAAGAAGAAACTACAAAAGGGAGAG TCTCACATTGCTGTGATTGGTGGGACTGGCAAGTATGAAGGTGCTAATGGGTTTGCTGTGGTCAAAGCTGTGGATTTAGGCTCTAATTTTGCTCTCGTTG AAGAGTACACAACTAATGATTTCCTTCTCTTCACTAGCAACTCCGCTAGTCTTGAAGATCAACTAATCCCCAAAGCTTGTTTCTTTCTCAGTGAAGAATC TTACAGTTCAGGTTTTCAACAACTCCATCTCAACAGCTCCATCTTACACACCAACAGCAGTCCACAACTTCTTCATACTTTGTATATATGTGCTCAATAT TCACCATTCCCTCTTCATCCAACTTCAACTCCAAACCATTCCATTACTCAGCGAAACAAGAATCACAAACATGGCAAAACCGATGGCCGCCAGCTGTTCC TGCCTTCTCTTCATCCTCCTAGTAGCCGTTGCTCTTTCCTCCGAGTGGTAGCCGGAATAATCGCGAGGACGGACATCAACGGGATCCCATTCTCGGTCCC GAACAACAACATCTTCCCACTCCAAGGGGGAACCCCGCTGTTGAATCCTAACAACATCAACAACCTAATAAACCCGAACACCGCCCCCTTAATGGCCGGG CTCAACCCTAGCGCCACCTCCGGGCAGGCAAACACCGTCCTCCAGAACGCAGGAAGCAGCGGCGTGGTGAACCCATCCACCAACAGCCAGCCATTCGTTA CGGCAGGGCAGCTGCCAGCGGGGCTGACACTACAGAAGCTGATGTTCGGGTCGATCACAGTGTTCGACGATGAATTGACGGAGGGGCATGAGTTGGGTTC GGCGGTGCTAGGGAGAGCTCAAGGGTTTTACTTGACGAGCTCTGTGGACGGGACCAGCCACACGATGTCGATGACTCTGATGATGCACGAGCACAGTGGT GAGCATGAGCATGAAGGTCATGAGGACACAATCAGCTTCTTTGGGGTTCACAGGAATGCGGCTCCGGTATCGAGTGTGGCGGTGGTGGGTGGGACGGGGA AGTATGAGGATGCTAAAGGGTATGCGACGATAGAGGCGATTCATCAGGAGGATCAGCATGTCACTGATGGTGTTGATACTATTACCCAAATCAATGTGTA TCTTTCCGACTGA
AA sequence Show only first row Show all	>Lus10003301 pacid=23169866 polypeptide=Lus10003301 locus=Lus10003301.g ID=Lus10003301.BGIv1.0 annot-version=v1.0 MFIFFFFIATIINQSSSARTIANPIPPPSSHHNHHKNLTFLMQNVLNVTKHRSPNQATKQLTTQIPFPKPLGIFPPSKGILIPQQTSNLQTAKQTLDDSA IGLLSFPAGRATLEELEVGSVTEISEELFENLSYGPVVVGRAEGVFVAASSGDDDRTNSHMVAMTANLFINGDDQKVVSGDGLRLFGVHSSNKKKLQKGE SHIAVIGGTGKYEGANGFAVVKAVDLGSNFALVEEYTTNDFLLFTSNSASLEDQLIPKACFFLSEESYSSGFQQLHLNSSILHTNSSPQLLHTLYICAQY SPFPLHPTSTPNHSITQRNKNHKHGKTDGRQLFLPSLHPPSSRCSFLRVVAGIIARTDINGIPFSVPNNNIFPLQGGTPLLNPNNINNLINPNTAPLMAG LNPSATSGQANTVLQNAGSSGVVNPSTNSQPFVTAGQLPAGLTLQKLMFGSITVFDDELTEGHELGSAVLGRAQGFYLTSSVDGTSHTMSMTLMMHEHSG EHEHEGHEDTISFFGVHRNAAPVSSVAVVGGTGKYEDAKGYATIEAIHQEDQHVTDGVDTITQINVYLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	0	1
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	1.0	0.9724
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	2.0	0.9606
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	2.8	0.9514
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	3.0	0.9516
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10034020 [exp]	3.7	0.9345
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	4.2	0.9429
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	4.5	0.9511
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	5.5	0.9384
					Lus10002087 [exp]	5.7	0.9443
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	6.0	0.9479

Compare expression of checked genes

Lus10003301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.