Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 447 / 2e-154 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 442 / 2e-152 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 337 / 5e-111 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42230 327 / 3e-107 SCPL41 serine carboxypeptidase-like 41 (.1) AT5G42240 313 / 9e-102 SCPL42 serine carboxypeptidase-like 42 (.1) AT2G12480 306 / 1e-99 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT4G30610 285 / 3e-91 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G35770 285 / 5e-91 SCPL28 serine carboxypeptidase-like 28 (.1) AT1G61130 282 / 4e-90 SCPL32 serine carboxypeptidase-like 32 (.1) AT2G35780 280 / 2e-89 SCPL26 serine carboxypeptidase-like 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030317 [exp] 886 / 0 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 600 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 599 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 599 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 590 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 585 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10030315 [exp] 557 / 0 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2) Lus10023882 [exp] 545 / 0 AT1G48410 444 / 2e-146 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10040326 [exp] 511 / 1e-179 AT2G33530 436 / 2e-150 serine carboxypeptidase-like 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034400 [exp] 520 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 520 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 511 / 8e-180 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 511 / 3e-179 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 488 / 3e-170 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.001G065900 [exp] 447 / 1e-154 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 446 / 8e-154 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 438 / 7e-151 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 416 / 3e-142 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 311 / 5e-101 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10003302 pacid=23169868 polypeptide=Lus10003302 locus=Lus10003302.g ID=Lus10003302.BGIv1.0 annot-version=v1.0 ATGGCAGGTTCTCGGTCTCGGATATGGATTGTTATGTTGGTGATCAGTATCGCAACATTAATCGAGTCATCAGGAGCAGACCAAGAGGATGACAAGATAG TGAAGCTGCCGGGGCAGCCAGATGTTAGCTTCCGACAGTATGCAGGGTATGTGACTGTTGATGAAACCCAGCAAAGGAATCTCTTCTACTACTTTGTTGA AGCAGAGGCTAACTCCAACTCAAAGCCTCTCGTCCTCTGGCTCAATGGAGGGCCTGGCTGCTCTTCCGTTGGTGGCGGAGCTTTCACCGAACACGGACCT TTCAAGCCAAATGCAGCTGGATCACTGGTAAAGAATGACTACAGTTGGAACAAAGAAGCAAACATAATATACCTGGAATCTCCAGCTGGAGTTGGTTTCT CGTATTCCCTGAACACTTCATTCTATACATCGGTTAATGATGTCATAACAGCTTATGACAGCTTAGTGTTCCTGCAACGATGGCTACTTAAGTTTCCTGA ATACAAGAATAGTAACCTTTTCATTGCTGGAGAGAGCTATGCCGGTCATTATGTGCCACAACTAGCACAGCTAATTGTGGAGTCAAGGTCAAATCTCCGG TTGAAAGGCATCTCTATAGGAAACCCGACGTTGGAGTTCAACGCAGATTTCAACGGGGAAGGGAAGTTCTTTTGGTCACACGGCATAATCTCAGACGACA CTAACTACCTTGTGGAGAGAACCTGCAATACTTCACAGCTCAGGAGACAGGCGATGACCGGCAACTTTTCTGAGCCCTGCAAAATCGTCGCAGCTCGCAT CGCTGCTGAAGTTCCTGACCGCGGATTTGATAGATATGATGTCACTTCTGATGTCTGTTTGTCGGACAATGCTGGATCTGGAGCTCCCATTCCCTCTCTG GAATCCATTTTCCATCCATTTTCATCTCTCCGGTCCAACCAAGTTGCCCACTCAGCTTTCAAAACTGGAGATTCCATAGACGTGTGTGTACAAGATGAGA TGACCAAGTATTTGAACAGAAAAGATGTTCAGGAAGCTATGCATGCCCGGCTCGCTGGCGTCAATAATTGGACTGCTTGCACCCACCGTGTGAAGTATGA GCAGACCGATTTGGAAAATGCAAGTATAGGAGTGGTGGGTTCATTAGTGAGCTCGGGCATCCGAGTGCTGGTTTACAGCGGGGATCAAGACTCGGCTGTC CCGTTTATAGGGACTAGACTTGTGGTGAATAGTCTGGCAAAAAATATGGGATTGAACACCACTGTTTCATACAAGCCATGGCTTGATGATGACCACCAAA TAGGTGGATGGACACAAGTATACGGGAAGAACAGACTTGCATATGCAACAATCAGAGGAGCTTCTCACATGGCACCCTTATCCTCTCCAAAGAGGTCACT CACATTATTTGCTACATTTCTATCTGGGAAACAATTGGCATCTTAA
AA sequence Show only first row Show all	>Lus10003302 pacid=23169868 polypeptide=Lus10003302 locus=Lus10003302.g ID=Lus10003302.BGIv1.0 annot-version=v1.0 MAGSRSRIWIVMLVISIATLIESSGADQEDDKIVKLPGQPDVSFRQYAGYVTVDETQQRNLFYYFVEAEANSNSKPLVLWLNGGPGCSSVGGGAFTEHGP FKPNAAGSLVKNDYSWNKEANIIYLESPAGVGFSYSLNTSFYTSVNDVITAYDSLVFLQRWLLKFPEYKNSNLFIAGESYAGHYVPQLAQLIVESRSNLR LKGISIGNPTLEFNADFNGEGKFFWSHGIISDDTNYLVERTCNTSQLRRQAMTGNFSEPCKIVAARIAAEVPDRGFDRYDVTSDVCLSDNAGSGAPIPSL ESIFHPFSSLRSNQVAHSAFKTGDSIDVCVQDEMTKYLNRKDVQEAMHARLAGVNNWTACTHRVKYEQTDLENASIGVVGSLVSSGIRVLVYSGDQDSAV PFIGTRLVVNSLAKNMGLNTTVSYKPWLDDDHQIGGWTQVYGKNRLAYATIRGASHMAPLSSPKRSLTLFATFLSGKQLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	0	1
AT4G38590		BGAL14	beta-galactosidase 14 (.1.2)		Lus10014125 [exp]	1.0	0.7962
AT2G37980			O-fucosyltransferase family pr...		Lus10028253 [exp]	2.0	0.7753
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Lus10028202 [exp]	6.5	0.7342
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10014318 [exp]	7.1	0.7433
					Lus10029488 [exp]	7.7	0.7036
AT3G44670			Disease resistance protein (TI...		Lus10037667 [exp]	8.1	0.7704
AT5G18560	AP2_ERF	PUCHI	Integrase-type DNA-binding sup...		Lus10026053 [exp]	12.0	0.7222
					Lus10026090 [exp]	14.1	0.7064
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10028105 [exp]	15.7	0.7505
AT5G14530			Transducin/WD40 repeat-like su...		Lus10032128 [exp]	19.0	0.6837

Compare expression of checked genes

Lus10003302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.