Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33530 114 / 8e-30 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G28110 113 / 2e-29 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G12480 74 / 2e-15 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT1G61130 74 / 2e-15 SCPL32 serine carboxypeptidase-like 32 (.1) AT5G42230 72 / 8e-15 SCPL41 serine carboxypeptidase-like 41 (.1) AT5G23210 69 / 8e-14 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT5G42240 69 / 9e-14 SCPL42 serine carboxypeptidase-like 42 (.1) AT1G43780 69 / 1e-13 SCPL44 serine carboxypeptidase-like 44 (.1) AT2G24000 67 / 5e-13 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT4G15100 66 / 1e-12 SCPL30 serine carboxypeptidase-like 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030315 [exp] 285 / 6e-92 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2) Lus10023882 [exp] 232 / 7e-71 AT1G48410 444 / 2e-146 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10014388 [exp] 223 / 1e-70 AT1G28110 373 / 8e-125 serine carboxypeptidase-like 45 (.1.2) Lus10040326 [exp] 181 / 6e-55 AT2G33530 436 / 2e-150 serine carboxypeptidase-like 46 (.1) Lus10023446 [exp] 180 / 2e-54 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 175 / 2e-52 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 175 / 3e-52 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 169 / 4e-50 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023447 [exp] 168 / 6e-50 AT2G33530 441 / 2e-152 serine carboxypeptidase-like 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G036500 [exp] 140 / 1e-39 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 140 / 2e-39 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 139 / 4e-39 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 138 / 2e-38 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 136 / 9e-38 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.003G164000 [exp] 110 / 2e-28 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 110 / 3e-28 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 108 / 1e-27 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 105 / 2e-26 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.010G220100 [exp] 69 / 1e-13 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10003303 pacid=23169875 polypeptide=Lus10003303 locus=Lus10003303.g ID=Lus10003303.BGIv1.0 annot-version=v1.0 ATGGATCATGGCTGTTTGTTGCCAGATCCTCCTGATCCTCAGGCCTCATCTCTGTATTTAGTAGATTTCTACATCACTGGAGAGAGCTATGCTGGTCACT ATGTGCCCCAACTAGCACAGCTATTTCTGGAGTCGGGAAAAAATCTCAACTTGAAAGCCATTGCTGTAAGTTCAAGTGGACAAAATAATAATCCTGATAC GTCCTACGTTTATGTTTTACTGAAGATAGGAAACCCATTGTTGGAATTCGACACAGATTTCAACGGGGGAGGAAAGTACTACTGGTCTCACAGCTTGATA TCAGACAACACCTACCGCCTTATCAACACAATCTGCAACACCTCCCAGCTCAGGAGAGATGCAACTTCAGGCATACTTTCCAAACCATGCAAAACTGTTG CAACTCGGATCGCTTCGGAAATTCCTGCCAGCAATTCGTTCAATAAGTATGATGTCACTTCAGATGTTTGCTTAGATCAGACCAAGTCTGTAGCTGCAGC TTCACAGGAGACTTTAGCAGCAGCTTTCCACCCATTTTCTGCCCTCAGGTCCAGCCAAGTCGCTCGCAGGAATTTCGCAAGTTCACCCTCACATACAATG ACCCCCTCAGTTTAA
AA sequence Show only first row Show all	>Lus10003303 pacid=23169875 polypeptide=Lus10003303 locus=Lus10003303.g ID=Lus10003303.BGIv1.0 annot-version=v1.0 MDHGCLLPDPPDPQASSLYLVDFYITGESYAGHYVPQLAQLFLESGKNLNLKAIAVSSSGQNNNPDTSYVYVLLKIGNPLLEFDTDFNGGGKYYWSHSLI SDNTYRLINTICNTSQLRRDATSGILSKPCKTVATRIASEIPASNSFNKYDVTSDVCLDQTKSVAAASQETLAAAFHPFSALRSSQVARRNFASSPSHTM TPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10003303 [exp]	0	1
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10035766 [exp]	4.2	0.6830
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	8.1	0.7091
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	11.7	0.7063
					Lus10033730 [exp]	15.7	0.6820
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018523 [exp]	20.3	0.6782
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	25.7	0.6656
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	26.9	0.6656
					Lus10010383 [exp]	28.1	0.6656
					Lus10000380 [exp]	29.3	0.6656
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	29.5	0.6734

Compare expression of checked genes

Lus10003303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.