Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39420 201 / 6e-64 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 199 / 7e-63 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 194 / 3e-61 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 188 / 8e-59 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 177 / 2e-54 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 173 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 166 / 8e-50 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 149 / 4e-43 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G77420 121 / 3e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 112 / 2e-29 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040328 [exp] 228 / 3e-74 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 226 / 5e-70 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 169 / 1e-50 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 134 / 7e-38 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10017600 [exp] 131 / 8e-37 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 130 / 8e-36 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041441 [exp] 122 / 2e-32 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 120 / 4e-32 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 118 / 2e-31 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049000 [exp] 219 / 8e-71 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 218 / 2e-70 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 159 / 2e-47 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 150 / 9e-44 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 141 / 6e-40 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G046500 [exp] 124 / 5e-34 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 117 / 1e-30 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 89 / 9e-21 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 89 / 9e-21 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 87 / 5e-20 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10003305 pacid=23169859 polypeptide=Lus10003305 locus=Lus10003305.g ID=Lus10003305.BGIv1.0 annot-version=v1.0 ATGGTAATGAGTCTCTGTTTTTTTTTTGGGTGTGTCTCTGCACTGCCTTTCCAGGCCGATTTTCCCTTACTGGGTTTTCATTCTTTCCAGGAGAGAGAAG AAGATGGTGTCAAATACAGTGAGGTTGGTTTAGTTTTACAACGTCCAATAACTCCCCTCCTCTGTTTTTTTGTTTTTGGTTTCATTCTAAAGGAAAAGAA TGGAACTAATGAACCGCAGGAGTTTACAGTGAATTCGAGAGGGATAAAGTTGTTTACGTGCAATTGGGTTCCGTTGAAGCAAGATGCAAGAGCTTTGATC TTTCTTTGCCATGGATATGGCATGGAGTGCAGCGTCACCATGAACACAGGGACGGCGATGAGGCTGGCGAAAGAAGGATACGGAGTACATGGGATGGATT ACGAAGGACATGGGAAATCAGGTGGATTACAAGGATACATAGAAAACATTGATTCTGTGGTTGAGGATTGCTCCAAACATTTCACCAACATATCCGAGGA GGAAGAGAAGAAGAGATCAGGGAAGAAGATAGAGAGGTATATGATGGGAGAGTCGTTGGGGGGAGCAGTGACGTTGATGCTCCACCGATCAATGCCACTT TTCTGGGACGGTGCCATTTTGCTGGCTCCTATGTGTAAGATAGCCGACGATGTGAAGCCTTCCCCGTTGATCACTAACGTTCTCACAAAGTTGAGTTACA TTATTCCCACTTGA
AA sequence Show only first row Show all	>Lus10003305 pacid=23169859 polypeptide=Lus10003305 locus=Lus10003305.g ID=Lus10003305.BGIv1.0 annot-version=v1.0 MVMSLCFFFGCVSALPFQADFPLLGFHSFQEREEDGVKYSEVGLVLQRPITPLLCFFVFGFILKEKNGTNEPQEFTVNSRGIKLFTCNWVPLKQDARALI FLCHGYGMECSVTMNTGTAMRLAKEGYGVHGMDYEGHGKSGGLQGYIENIDSVVEDCSKHFTNISEEEEKKRSGKKIERYMMGESLGGAVTLMLHRSMPL FWDGAILLAPMCKIADDVKPSPLITNVLTKLSYIIPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003305 [exp]	0	1
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10009541 [exp]	2.2	0.9415
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003304 [exp]	2.4	0.9410
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	6.0	0.9078
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10023508 [exp]	7.4	0.9088
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10040228 [exp]	8.5	0.9374
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10033538 [exp]	9.8	0.9019
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10034132 [exp]	9.8	0.8778
AT4G01150			unknown protein		Lus10003031 [exp]	10.5	0.9288
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10028261 [exp]	11.8	0.9358
AT3G17930			unknown protein		Lus10026379 [exp]	16.1	0.9153

Compare expression of checked genes

Lus10003305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.