Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55140 563 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G09540 459 / 6e-163 Pectin lyase-like superfamily protein (.1) AT1G30350 194 / 2e-59 Pectin lyase-like superfamily protein (.1) AT5G55720 195 / 4e-59 Pectin lyase-like superfamily protein (.1) AT1G11920 172 / 3e-50 Pectin lyase-like superfamily protein (.1) AT3G54920 171 / 4e-49 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT5G63180 162 / 2e-46 Pectin lyase-like superfamily protein (.1) AT3G27400 159 / 2e-45 Pectin lyase-like superfamily protein (.1) AT4G22090 158 / 4e-45 Pectin lyase-like superfamily protein (.1) AT5G04310 160 / 7e-45 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030313 [exp] 669 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10025290 [exp] 498 / 9e-179 AT3G55140 536 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10024439 [exp] 487 / 1e-173 AT3G55140 534 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011258 [exp] 171 / 7e-50 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 167 / 3e-48 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 165 / 2e-47 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 161 / 5e-46 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 159 / 3e-45 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 158 / 6e-45 AT1G67750 623 / 0.0 Pectate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048600 [exp] 551 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.016G080600 [exp] 531 / 0 AT3G55140 554 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G214400 [exp] 527 / 0 AT3G55140 553 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G008100 [exp] 177 / 2e-52 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.011G008000 [exp] 177 / 3e-52 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.004G007300 [exp] 167 / 1e-48 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.011G093400 [exp] 165 / 1e-47 AT5G63180 509 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 157 / 8e-45 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 155 / 5e-44 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 156 / 6e-44 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10003307 pacid=23169864 polypeptide=Lus10003307 locus=Lus10003307.g ID=Lus10003307.BGIv1.0 annot-version=v1.0 ATGACTTCACTTCCATATGCCGATGCCGACGACCACATGAGAGCCCTGGCTTGCCGGGCTGAAGGATTCGGCCGGACGGCCATCGGCGGTCTCCACGGCG CACTCTACTCCGTCACCTCTTTAGCAGATGATGGCCCCGGATCACTGCGTGAGGGCTGCCGAAGGAAGGAACCATTGTGGATTGTGTTCGATGTCTCCGG CATCATTGAGCTCAAGACATTCTTGAGCGTGTCGTCTTACAAGACGATCGATGGCCGGGGCCAGAGAATTAAGTTCACTGGGAAGGGGTTAAGGCTCAAG GAATGTGAGCATATCATCATCTGTAACCTGGAATTCGAAGGTGGGAGAGGGCATGACGTTGATGGGATCCAGGTCAAGCCGAATTCGAGGCACATATGGA TTGACAGGTGCAGCCTCCGTGATTATGACGATGGGCTCATCGACATCACAAGACAAAGCACTGATATAACTGTCTCCAGGTGTTACTTTGCTCAACATGA CAAGACAATGCTTATTGGGGCAGACCCTACTCATGTGGGTGATAGATGCATCAGGGTGACCATTCACCATTGCTTCTTCGATGGAACGCGGCAGAGACAG CCTCGTCTTAGATTTGGGAAAGTTCATCTCTATAACAATTACACTAGGAATTGGGCAATCTATGCTGTCTGTGCTAGCGTTGAAGCTCAGATATACTCGG AATCCAATATCTACGAAGCAGCAGAGAAGAAAAGGACCTTTGAATATTATACAGAGAAGGCTGCAGATGCAGAAGAGGGCAAGTCCGGCTGCATAAAGTC AGTTGGAGATGTGTTCCTGAATGGAGCCCTGCCATCACTACAGCCAGGTATTGCTGAACATGCAGTGTTCCAACCAAACGAACATTATCAAAAGTGGACA GTGGAGACTCCTTCAGATTCTTTGAAGGAAGTTCTTCAAGTCTGTGCAGGTTGGCAAGCTATTCCTCGCCCAAAAGAAAAGATACAGAACTAG
AA sequence Show only first row Show all	>Lus10003307 pacid=23169864 polypeptide=Lus10003307 locus=Lus10003307.g ID=Lus10003307.BGIv1.0 annot-version=v1.0 MTSLPYADADDHMRALACRAEGFGRTAIGGLHGALYSVTSLADDGPGSLREGCRRKEPLWIVFDVSGIIELKTFLSVSSYKTIDGRGQRIKFTGKGLRLK ECEHIIICNLEFEGGRGHDVDGIQVKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQ PRLRFGKVHLYNNYTRNWAIYAVCASVEAQIYSESNIYEAAEKKRTFEYYTEKAADAEEGKSGCIKSVGDVFLNGALPSLQPGIAEHAVFQPNEHYQKWT VETPSDSLKEVLQVCAGWQAIPRPKEKIQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55140			Pectin lyase-like superfamily ...		Lus10003307 [exp]	0	1
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10036924 [exp]	1.0	0.8275
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10033580 [exp]	1.4	0.8215
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10008444 [exp]	1.7	0.8171
AT5G24510			60S acidic ribosomal protein f...		Lus10034864 [exp]	5.3	0.7746
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	6.0	0.7827
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	10.5	0.7628
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10037136 [exp]	12.4	0.7934
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10021081 [exp]	15.7	0.8038
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10008024 [exp]	16.5	0.7279
AT5G27260			unknown protein		Lus10035759 [exp]	21.4	0.7208

Compare expression of checked genes

Lus10003307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.