Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12360 881 / 0 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 772 / 0 Ankyrin repeat family protein (.1) AT2G31820 355 / 2e-114 Ankyrin repeat family protein (.1) AT5G60070 340 / 7e-110 ankyrin repeat family protein (.1) AT1G05640 340 / 4e-109 Ankyrin repeat family protein (.1) AT1G07710 334 / 9e-108 Ankyrin repeat family protein (.1) AT2G01680 330 / 3e-106 Ankyrin repeat family protein (.1) AT5G02620 318 / 6e-102 ATANK1, ANK1 ankyrin-like1 (.1) AT1G10340 114 / 1e-26 Ankyrin repeat family protein (.1.2) AT5G54710 100 / 3e-22 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023460 [exp] 894 / 0 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10040335 [exp] 829 / 0 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 734 / 0 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003986 [exp] 714 / 0 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 358 / 8e-117 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 358 / 1e-116 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 353 / 5e-115 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 350 / 9e-114 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 342 / 7e-110 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048400 [exp] 957 / 0 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 947 / 0 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 785 / 0 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 361 / 4e-118 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 360 / 1e-116 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 357 / 5e-115 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 351 / 1e-114 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 350 / 4e-114 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 348 / 3e-113 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 345 / 6e-112 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10003308 pacid=23169851 polypeptide=Lus10003308 locus=Lus10003308.g ID=Lus10003308.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCAATTCCAGAAGGGGAAGAGATGGACTTGGAGAAAGGAATTGTTGTGACCCCTCAGAAATCCCACAACCCATTGGCTGAGCTATCACCAA CTCCTTCACCTTCATCGGCATCAACAGCTCCAGCTTTAGTTCTCTCCAATTCAGGCAAAAGGATTGATCAAGCTGGCAAGAAGAAGTATGTCAAGCAAGT TACTGGCCGCCATAACGACACCGAGCTCCACTTGGCAGCTCAACGTGGGGATTTGGCTGCTGTGAAGCAGATTCTAGATGATATTGATACTCAAATGGTG GGGACATTGACCGGCTCTGAGTTTGAAACTGAAGTTGCGGAGATAAGGGCATCTGTTGTGAATGAGGTCAATGAGTTGGGAGAGACTGCCTTGTTTACTG CTGCTGATAGAGGACACCTTGAGGTGGTGAAGGAGCTTTTGAAGTATTCGAGCAAAGAGTGCACTACTAGGAAGAACCGGTCAGGGTTTGATCCCCTCCA TATCGCTGCCGTGCAAGGACACCATGCCATTGTTCAGGTTCTACTTCATCACGACCCTAGCCTGAGCCAAACATATGGCCCATCAAACGCCACTCCTCTG GTATCTGCTGCAACCAGAGGGCATACAGATGTGGTCATTGAATTGCTGTCCATGGATGGTAGCTTACTGGAGATCTCTAGATCAAATGGTAAAAATGCAC TGCATTTGGCTGCCAGACAAGGTCATGTTGAAATAGTTAGGGCCTTGCTCATGAAGGACCCACAGTTGGCTCGAAGGACTGATAAGAAAGGGCAGACTGC ATTGCACATGGCTGTAAAAGGTCAGAGCTGTGAGGTTGTCAAATTACTTCTTGGCGCTGATGCTGCCATTGTCATGCTCCCGGACAAGTTTGGTAATACA GCATTACATGTGGCTACTAGAAAAAAGCGCGCAGAGATTGTGAATGAACTGTTATCACTTCCTGACACAAATGTCAATGCACTGACTAGAGATCATAAAA CAGCTCTCGACATAGCTGAAGAGCTTCCCCTTTCTGAAGAATCTTCAGACATAAGGGAGGTTCTTTCTCGGTATGGAGCTGTTAGAGCTAATGAACTCAA CCAACCAAGGGATGAGTTGAGGAAGACAGTCACGCAGATTAAGAAAGATGTTCATACTCAACTCGAGCAAACCAGACGGACCAACAAGAATGTGGATAAC ATCTCAAAAAATCTGAGGAAGCTACACCGTGAAGGTATCAACAATGCCACCAACTCGGTCACTGTCGTAGCTGTGTTATTTGCGACTGTTGCCTTTGCAG CAATCTTCACTGTACCTGGAGGGGATGACAATAATGGATTGGCTGTTGTGGTGACCCATGCTTCTTTCAAAATCTTCTTCATCTTCAATGCCATCGCCCT CTTCACATCGTTAGCTGTTGTCGTGGTCCAAATCACATTGGTTCGAGGAGAGACAAAAGCAGAAAAACGGGTGGTTGAAGTGATCAACAAGCTAATGTGG TTGGCTTCTGTGTGTACTTCGGTGGCGTTTATGGCGTCTTCTTACATAGTAGTTGGGAGAAAACACGAATGGGCTGCTATTCTGATAACGGTTGTCGGCG GAGTGATAATGGCTGGTGTTCTTGGCACCATGACTTACTATGTGGTGAAGTCGAAAAGGAATCGGTCCATGAGGAAGAAGGATAAGCAGGCAAGGAGAAG CGGGTCCAATTCGTGGCATCACTCTGACTACTCCAACTCTGAAGTTGATCGAATTTATGCCCTTTAA
AA sequence Show only first row Show all	>Lus10003308 pacid=23169851 polypeptide=Lus10003308 locus=Lus10003308.g ID=Lus10003308.BGIv1.0 annot-version=v1.0 MASPIPEGEEMDLEKGIVVTPQKSHNPLAELSPTPSPSSASTAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVKQILDDIDTQMV GTLTGSEFETEVAEIRASVVNEVNELGETALFTAADRGHLEVVKELLKYSSKECTTRKNRSGFDPLHIAAVQGHHAIVQVLLHHDPSLSQTYGPSNATPL VSAATRGHTDVVIELLSMDGSLLEISRSNGKNALHLAARQGHVEIVRALLMKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLGADAAIVMLPDKFGNT ALHVATRKKRAEIVNELLSLPDTNVNALTRDHKTALDIAEELPLSEESSDIREVLSRYGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVDN ISKNLRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDDNNGLAVVVTHASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMW LASVCTSVAFMASSYIVVGRKHEWAAILITVVGGVIMAGVLGTMTYYVVKSKRNRSMRKKDKQARRSGSNSWHHSDYSNSEVDRIYAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10003308 [exp]	0	1
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	2.2	0.8596
					Lus10024821 [exp]	4.0	0.8560
AT5G16110			unknown protein		Lus10009170 [exp]	4.5	0.8508
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	5.7	0.8195
AT1G49050			Eukaryotic aspartyl protease f...		Lus10032485 [exp]	6.5	0.8379
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	7.1	0.8255
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	8.8	0.8529
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	13.0	0.8409
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10032753 [exp]	13.3	0.8223
AT3G24740			Protein of unknown function (D...		Lus10022809 [exp]	14.4	0.8140

Compare expression of checked genes

Lus10003308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.