Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39370 70 / 3e-13 MAKR4 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030311 [exp] 332 / 5e-113 AT2G39370 181 / 4e-54 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Lus10040336 [exp] 167 / 8e-49 AT2G39370 174 / 8e-52 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Lus10023461 [exp] 146 / 5e-41 AT2G39370 177 / 4e-53 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048300 [exp] 126 / 4e-33 AT2G39370 175 / 2e-51 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.010G212800 [exp] 127 / 5e-33 AT2G39370 176 / 2e-51 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.016G080800 [exp] 66 / 7e-12 AT2G39370 157 / 9e-45 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.006G214700 [exp] 49 / 3e-06 AT2G39370 116 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 4, unknown protein Potri.010G090500 [exp] 42 / 0.0004 AT5G26230 150 / 5e-42 membrane-associated kinase regulator 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003309 pacid=23169874 polypeptide=Lus10003309 locus=Lus10003309.g ID=Lus10003309.BGIv1.0 annot-version=v1.0 ATGGCTGAAATAATTCTGCCACCACATGATGAATCAACAGCACCAGATGATGATGACTACATCGACATTGAAATCAGCTCCTTTTCATCATCCTTCCTCT TCCATGATTCCATCAACTCAAGAGAGTTTGAGTTCCAAATGTCAGCATCATCACCATCATCATCAAACCACACTACTACTTCTCCAGCTGATGAGCTCTT CTACAAAGGAAAACTCCTTCCCCTTCACCTCCCACCCCGTTTGCAAATGTTCGCCAAGCTCCTCGAAAACAGCAGCTCACCGCCCTCTTCTTCTATCTAT GGTACTGAGTCCACAAAGCATGTGGTCGATGTTGATGAAGAATTGTACAGCACCCCACCAGTGGCAACTCCAACCGCTGCAAGTACACCTTATGAGTCCT GCACTATCTCTCCAGCTGATTCCTGCCACGTCAGCAGGGAGTTTACGCCTGACGACTTCTTGCAGGAGTATGCCAATCCGAAGAGGTCATGGGGCGCCAA GAAGCTTAAACTGATCAAACAGTCTAGTAGTCTATGTTCAAAGCTTAAAGCTTCTAGATCTTACCTCAAGGCCTTGTTTGGGAGGTCCGGTTGCTCGGAT GATTCTTCATGTGCAGCTGCAACTGCTGCTAAAGTTGCAGACGAAGGAACCATTTCTAAAGAAACCGGACAGCAAACAAAGAAACCTCAGATACAAACCA TAGTATCATTGCCTGTTAACAAACAGACGGCCAATGAGGATTCCAGTTCTAGGCTGCACAGGAGATCATTCTCAATGGCTATTAAACCAAAACCGGATAC CAAGTCTTCATCAGCTTCTTCTTATTCATCATCATCATCATCATCTTCAGGCTTGAGCAGCTCTAGAGGGTACCGAGGGTTTCCATTTCTCAAGAGAAGT AGCAGTGTTGTAAGTTCAGAGATTGACAACCCAATTCAAGGAGCTATTGCACATTGCAAACAGTCTCAGGATAATTTACATACTGTAAAGTGA
AA sequence Show only first row Show all	>Lus10003309 pacid=23169874 polypeptide=Lus10003309 locus=Lus10003309.g ID=Lus10003309.BGIv1.0 annot-version=v1.0 MAEIILPPHDESTAPDDDDYIDIEISSFSSSFLFHDSINSREFEFQMSASSPSSSNHTTTSPADELFYKGKLLPLHLPPRLQMFAKLLENSSSPPSSSIY GTESTKHVVDVDEELYSTPPVATPTAASTPYESCTISPADSCHVSREFTPDDFLQEYANPKRSWGAKKLKLIKQSSSLCSKLKASRSYLKALFGRSGCSD DSSCAAATAAKVADEGTISKETGQQTKKPQIQTIVSLPVNKQTANEDSSSRLHRRSFSMAIKPKPDTKSSSASSYSSSSSSSSGLSSSRGYRGFPFLKRS SSVVSSEIDNPIQGAIAHCKQSQDNLHTVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10003309 [exp]	0	1
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	13.0	0.9676
AT1G07750			RmlC-like cupins superfamily p...		Lus10015219 [exp]	14.9	0.9041
					Lus10008326 [exp]	18.6	0.9663
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	22.5	0.9661
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10007280 [exp]	25.2	0.9659
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	29.3	0.9654
AT3G61830	ARF	ARF18	auxin response factor 18 (.1)		Lus10041340 [exp]	29.3	0.8616
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10022106 [exp]	31.5	0.9652
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10017469 [exp]	34.7	0.9652
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	36.4	0.9642

Compare expression of checked genes

Lus10003309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.