Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55120 262 / 6e-89 A11, CFI, TT5 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) AT5G66230 206 / 9e-64 Chalcone-flavanone isomerase family protein (.1.2) AT5G66220 184 / 2e-59 Chalcone-flavanone isomerase family protein (.1) AT5G05270 71 / 4e-15 Chalcone-flavanone isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030310 [exp] 400 / 9e-144 AT3G55120 270 / 5e-92 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10030309 [exp] 241 / 2e-82 AT3G55120 162 / 2e-51 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10012878 [exp] 71 / 9e-15 AT5G05270 230 / 1e-76 Chalcone-flavanone isomerase family protein (.1.2) Lus10030529 [exp] 70 / 1e-14 AT5G05270 222 / 2e-74 Chalcone-flavanone isomerase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213000 [exp] 295 / 3e-102 AT3G55120 300 / 1e-103 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Potri.019G057800 [exp] 77 / 3e-17 AT5G05270 270 / 6e-93 Chalcone-flavanone isomerase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10003311 pacid=23169869 polypeptide=Lus10003311 locus=Lus10003311.g ID=Lus10003311.BGIv1.0 annot-version=v1.0 ATGGATCCAGTATCAGTTACAGAAATCCAAGTCGACGGCGTCGCATTCTCGGCCTCCATCAAACCGCCGGCTTCCAAGTCCAGTCACTTCCTCGCCGGCG CAGGCGTAAGGGGACTGGAGATAGAAGGGAATTTCGTCAAGTTCACGGCGATCGGAGTGTACGTGGAGGACAACTCGGTGGCGGCGGTTTCTGACAAATG GAAAGGGAAGACCGCTGAGGAGTTGAAGCAGTCCGTCGGATTCTACCGAGATATCGTTTCAGGACCATTCGAGAAGTTCACAAGAGTGACGATGATATTG CCGTTGTCGGGGGCACAGTACTCGGAGAAAGTGGTGGAGAATTGCGTTGCAGCGTGGAAATCCAGGGGAGTATACAGTGATGCAGAGGCTAAAGCCACAG ACAAGTTCCTTGAAATCTTCAAGGACCAAACCTTCCCTCCTGGAGCTTCTATTCTCTTCACCCAATTCCCACATGGATCATTAGCCATAAGTTTCTCCAA GGATGGGTCGGTCCCGGAAACTGCTGCGGCGGTGATAGATAACAAGCCGCTGTCGGAAGCAGTGCTATGGTCCATCATCGGGGAGCACGGCGTGTCCCCT GCTGCTAAACAGAGCCTGGCTGAGAGATTTTCGCTGTTGCTTAAGGCTTAA
AA sequence Show only first row Show all	>Lus10003311 pacid=23169869 polypeptide=Lus10003311 locus=Lus10003311.g ID=Lus10003311.BGIv1.0 annot-version=v1.0 MDPVSVTEIQVDGVAFSASIKPPASKSSHFLAGAGVRGLEIEGNFVKFTAIGVYVEDNSVAAVSDKWKGKTAEELKQSVGFYRDIVSGPFEKFTRVTMIL PLSGAQYSEKVVENCVAAWKSRGVYSDAEAKATDKFLEIFKDQTFPPGASILFTQFPHGSLAISFSKDGSVPETAAAVIDNKPLSEAVLWSIIGEHGVSP AAKQSLAERFSLLLKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10003311 [exp]	0	1
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10011683 [exp]	4.9	0.8213
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10027208 [exp]	5.3	0.7599
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039302 [exp]	7.1	0.8124
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10035719 [exp]	13.6	0.7162
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10007634 [exp]	18.3	0.7928
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003900 [exp]	19.7	0.7592
AT3G50685			unknown protein		Lus10014321 [exp]	19.8	0.7686
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10010895 [exp]	23.8	0.7247
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	27.0	0.7644
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	31.9	0.7667

Compare expression of checked genes

Lus10003311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.