Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46290 703 / 0 HERK1 hercules receptor kinase 1 (.1) AT2G39360 694 / 0 Protein kinase superfamily protein (.1) AT5G54380 580 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT5G24010 564 / 0 Protein kinase superfamily protein (.1) AT3G51550 508 / 3e-167 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 498 / 7e-164 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 497 / 1e-163 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G59700 459 / 3e-149 Protein kinase superfamily protein (.1) AT5G61350 414 / 5e-132 Protein kinase superfamily protein (.1) AT4G39110 405 / 5e-128 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030308 [exp] 1488 / 0 AT3G46290 735 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 711 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 706 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 593 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10027509 [exp] 571 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10028805 [exp] 554 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 551 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 497 / 4e-163 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10038595 [exp] 429 / 1e-143 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213200 [exp] 889 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 757 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 735 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G405500 [exp] 601 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 596 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.017G143049 [exp] 576 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.001G467000 [exp] 535 / 1e-178 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1) Potri.016G138700 [exp] 508 / 2e-167 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.005G143200 [exp] 496 / 3e-163 AT2G23200 674 / 0.0 Protein kinase superfamily protein (.1) Potri.005G143700 [exp] 461 / 4e-150 AT5G24010 566 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10003312 pacid=23169855 polypeptide=Lus10003312 locus=Lus10003312.g ID=Lus10003312.BGIv1.0 annot-version=v1.0 ATGGTGGTGGTGGTGGTGGTTCATAGCTTCAAGTTGCTCATCTGGGCCCTTTCATTTTCTTGCTTGGCTTCAGTTTCACTAATAAGTGGGTATGTTCCGG CCACCAACTATTTGATCAATTGCGGATCCACCAGTAACACCTTGGTCGACGGGGAACGAACCTTTGCAGCTGATAACGATGATTTCTTCTCCGGGATGCT ATCTCCCCAACAGAATGTTTCAATTACTGCTCCTAATTCCGTCTCTTCCGCCCTCTACCGAACTGCCAGAGTTTTCACGGCACCATCTCGTTACACATTC CCAATCAAGCAGTCCGGCCATCTGTGGATTCGCCTCCATTTCTACCCTTTTCTCGCCGGGAGTTACAATCTCAGCACCGCTCATTTCTCCGTCTCTGCTC AGAATTTCACCCTCTTCAAAGAGTACAGAGCCAAGCCTGATGAAGATCAGCCTGAGGTGAGGGAGTTCTCTCTCAATCTCAACTCCGGTAGTAATCTGGT TCTCGATTTCACTCCTTCCCATAATTCGTTCGCTTTTTTGAACGCATTGGAAGTGTTGTCAATACCAGAAGGGGTCATCCCTCAGACTGCCCAGAATAAG GCATTGGAGACTGTTCATAGGGTGAACATGGGGAAAACGAATGTGTTTCCTGCAAATGATACCTTATGGAGGCTTTGGGTTTCTGATGAAAAGTTTCTGA GGCATGATTTTCTTGCAGTCAACGTGACGAATCTCTCTGCTGTAAGTTTCAAAGATAGAGGCCCGACCAACTTCTCTGCTCCTCTTGGTGTCTACGGCAC AGCTACTAGGTTGAATTCTGATGGTAATCCGGGTACATTGGCAAATGTTACGTGGCATTTTGGTGTTGACCCTGGGTTTGATTACCTTGTGAGGTTCCAT TTCTGTGATATATTGGCTCTTGACCCTCACCCAAACTTCTATTTCAATGTCTATGTTGAGTTTGAGCTGGTCTACAAGTATCTTGATCTCAGGAATCTCA CGGGATACTCCTCTGGTGCTCCTTACTCTATGGATTACATTGCAGGCTCAGTTGCTGGTGACACTGTTACCATAAGTATAGGCCCTCCTCCTAATAACGA CAACAATCCAATCGCCATACTCAACGGCTTGGAGCTAGTCAAGATCAGCAACTCCAAGAACAGTCTTGATGTGTTGGATATTTCTTCTCCCAAGAACTCC AAGCCCAATGTTGTTCTCATACTTGTCTTGGTTGTTGGACTAGTGGTTGTTCTTCTTTCTGGGTTGGTTGTGTGGGTCGTTTGTTGTAGGAGGAGGAGGA GGAAATTCGGGGAAGGTAATCATCTGAAGCGGGATCAGTTTGCTGCGTACGGAGGGGGTATGATTTACTCGACGGATTACTCCAATGGCACAGCATTTTC GATCTCGAAATTCAACTACCGGTTCCCATTTTATGCGATCCAAGAAGCTACTGATAACTTCAGTGAGAATTTGGTACTGGGTGCTGGAGGTTTTGGTAAG GTTTACAAGGGAGTTTTAAGAGATGAGATGGTGGTGGCAGTGAAAAGAGCAAGCTCCCAATCACAAGGGATTTCGGAATTTAGGACTGAGATTGAACTGC TGTCCCAGTTTCGCCACAAGCATTTGGTGTCTTTAATTGGATACTGTGATGAAAGGAATGAGATGATTATATTGTACGAGTATATGCAGAATGGCAACTT GAAAGACCATCTCTATGGTTCCGAAAATCCCAGCTTGAGTTGGAGGCAACGACTTGAGATATGCATCGGCGCAGCTAAAGGGCTTCACTATCTTCACACT GGAACAGCAAAGTCCATCATCCATCGGGACGTCAAGTCTGCAAACATCCTGCTAGACGAGGATTTCATGGCTAAAGTTGCAGACTTTGGTCTTTCAAAGA CTGTCCCGGAGATCGACCATACACACGTAAGCACGGCAGTGAAAGGAAGCTTTGGTTATCTAGATCCAGAGTACTTTCTGAGGCAACAACTGACAGAGAA ATCAGACGTCTACTCGTTTGGAGTAGTGTTGTTTGAGGTACTCTGCGGCAGACCAGTGATCGACCCGTCGCTGCCTAGGGAAAATGTGAACTTGGTGGAT TATGCACTGAAGAACGTGAGGAAAGGAAAGTTGGAGGAAGTTGTCGATTCTAAACTCGAGGAGGAGATAAAGCCAGATTCATTGAAGAAGTTTGCATACA TAGCAGAGAAATGCTTGGCTGATAATGGGATGGATAGACCTTCGATGGGAGATGTGTTGTGGAACTTGGAATGCTCACTTCAGCTGCAGGTGAATGAAGA GTTTGCTCTTCAGTGGAAGGAGGAGATGTCGAGCAGCAATAATGGTGATAACAATGGGGCTGGAAACCCACAGATCAACCATGTCAAGAGCATCGGTGCG ACGGGGACTTCAGAACTTGGTGACCTTGGTGATGTTTCCATGAGCCAAGTGTTTGCTAAGTTGGTGAGCGACAACACTGAGGAGGAAATGAGGTAG
AA sequence Show only first row Show all	>Lus10003312 pacid=23169855 polypeptide=Lus10003312 locus=Lus10003312.g ID=Lus10003312.BGIv1.0 annot-version=v1.0 MVVVVVVHSFKLLIWALSFSCLASVSLISGYVPATNYLINCGSTSNTLVDGERTFAADNDDFFSGMLSPQQNVSITAPNSVSSALYRTARVFTAPSRYTF PIKQSGHLWIRLHFYPFLAGSYNLSTAHFSVSAQNFTLFKEYRAKPDEDQPEVREFSLNLNSGSNLVLDFTPSHNSFAFLNALEVLSIPEGVIPQTAQNK ALETVHRVNMGKTNVFPANDTLWRLWVSDEKFLRHDFLAVNVTNLSAVSFKDRGPTNFSAPLGVYGTATRLNSDGNPGTLANVTWHFGVDPGFDYLVRFH FCDILALDPHPNFYFNVYVEFELVYKYLDLRNLTGYSSGAPYSMDYIAGSVAGDTVTISIGPPPNNDNNPIAILNGLELVKISNSKNSLDVLDISSPKNS KPNVVLILVLVVGLVVVLLSGLVVWVVCCRRRRRKFGEGNHLKRDQFAAYGGGMIYSTDYSNGTAFSISKFNYRFPFYAIQEATDNFSENLVLGAGGFGK VYKGVLRDEMVVAVKRASSQSQGISEFRTEIELLSQFRHKHLVSLIGYCDERNEMIILYEYMQNGNLKDHLYGSENPSLSWRQRLEICIGAAKGLHYLHT GTAKSIIHRDVKSANILLDEDFMAKVADFGLSKTVPEIDHTHVSTAVKGSFGYLDPEYFLRQQLTEKSDVYSFGVVLFEVLCGRPVIDPSLPRENVNLVD YALKNVRKGKLEEVVDSKLEEEIKPDSLKKFAYIAEKCLADNGMDRPSMGDVLWNLECSLQLQVNEEFALQWKEEMSSSNNGDNNGAGNPQINHVKSIGA TGTSELGDLGDVSMSQVFAKLVSDNTEEEMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10003312 [exp]	0	1
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10007921 [exp]	3.2	0.8126
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	4.5	0.7987
AT5G51040			unknown protein		Lus10043024 [exp]	8.5	0.8021
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10025979 [exp]	10.6	0.7305
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	13.2	0.7960
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	13.6	0.7939
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	14.7	0.7855
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	16.8	0.8126
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	20.7	0.7798
AT3G62370			heme binding (.1)		Lus10023692 [exp]	21.7	0.7169

Compare expression of checked genes

Lus10003312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.