Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20490 2403 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G17580 2325 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT1G54560 2251 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G08730 2168 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT2G31900 1890 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT5G43900 1882 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 1877 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT4G28710 1818 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT2G20290 1634 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT4G33200 1580 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021570 [exp] 2399 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10017160 [exp] 2284 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10005521 [exp] 2264 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10022850 [exp] 1940 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 1622 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 1592 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10009791 [exp] 1471 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Lus10038072 [exp] 1451 / 0 AT4G33200 1982 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Lus10014753 [exp] 1207 / 0 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G199200 [exp] 2649 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.006G145700 [exp] 2499 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.013G043900 [exp] 2318 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 2298 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.002G254300 [exp] 1981 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.001G233100 [exp] 1979 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.009G025300 [exp] 1974 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.008G174500 [exp] 1869 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.006G220000 [exp] 1634 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.002G041800 [exp] 1360 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain) CL0010 [flax] [poplar] SH3 PF02736 [flax] [poplar] Myosin_N Myosin N-terminal SH3-like domain CL0010 [flax] [poplar] PF01843 [flax] [poplar] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Lus10003315 pacid=23177784 polypeptide=Lus10003315 locus=Lus10003315.g ID=Lus10003315.BGIv1.0 annot-version=v1.0 ATGGTGCTCGATACCATTATGAAAACATTTGAAAACAAGTGTGATGGAGAGATGGGGCCAGCAAGGCAAGGGGGTGTATATGCTGCACCAGACAACATAA TTGTTGGTTCTCATGTGTGGATTGAAGATCCCAAGTTGGCATGGATTGATGGTGAAGTTACTAGGATAAGTGGCAAAGACGTCCATGTACAAACTACGAA TGGGAAAAATGTGGTTACAAGTATATCAAAAGTATTTCCCAAGGACACCGAAGCCCCACCTGGGGGCGTGGATGACATGACCAAGCTTTCGTATTTACAC GAACCTGGAGTTCTGCAAAATCTGGCTACTAGATATGAACTTAATGAAATCTATACATACACCGGAAATATCCTAATTGCTGTCAATCCGTTTCAAAGAT TACCCCATCTCTATGATACCCACATGATGGAACAGTATAAAGGTGCTGCATTTGGGGAGCTAAGTCCTCATGTCTTTGCAGTGGCAGATGCTGCATACAG GGCAATGATTAATGACGGAAAAAGTAATTCAATCCTGGTTAGTGGTGAAAGTGGTGCCGGAAAAACTGAGACTACAAAGATGCTCATGAGATATCTTGCC TTCTTAGGAGGGCGATCTGGAGTAGAAGGAAGGACAGTTGAACAACAAGTTCTGGAGTCAAATCCTGTTCTTGAAGCATTTGGTAATGCCAAAACTGTTC GCAACAATAACTCGAGTCGGTTTGGAAAGTTTGTGGAGATCCAATTCGACAAGAGCGGCAGAATATCTGGCGCTGCGATCAGGACTTATCTGCTTGAGAG ATCTCGGGTGTGCCAAATTTCTGATCCAGAGAGAAACTATCATTGTTTTTATCTTCTATGTGCAGCACCAGCTGAGGTTAGAGAAAAATACAAGTTGGGG AGCCCAAAATCTTTCCATTATTTGAATCAATCAAGTTGTTATGAGCTGGATGGGATAAATGATGCCCATGAGTACCTCGAAACCAGAAGAGCAATGGATA TAGTTGGGATTAGTGAAGAAGAACAGGCAATTTTTAGGGTTGTAGCAGCAATTCTTCACCTTGGAAATATTGAATTTGCTAAAGGAGCAGAGATTGATTC ATCCAAGCTTAAGGATGATAAATCCCGATTTCATCTTGATACAACTGCAGAGCTCCTCAGGTGTGATCCCAAGAGCTTGGAAGATGCCCTTATCCAACGT GTAATGGTTACACCTGAAGAAATTATCACAAGAACACTTGATCCCGAGAATGCTCTTGGTAGTAGAGATGCTTTGGCTAAGACCCTATACTCTCGTCTTT TTGATTGGATTGTAGAAAAGTTAAACGTTTCAATTGGCCAGGACCCAGATTCAAAATCAATAATTGGGGTTCTAGATATCTATGGTTTTGAAAGCTTTAA GTGCAACAGGCAAGTCATTAGCATTGTCTGGTTGTTATTTGGTGCGGATTTCTGTTACTCTATTACTCTCTGTTGGATTGGTATCTGCTCTTATACCCTT TTGTATGTTGTATACAACACTTGTTTTGAGCAATTCTGCATCAATTTCACCAATGAAAAATTGCAGCAGCATTTCAATCAGCATGTGTTCAAAATGGAGC AGGAAGAGTATACCAAAGAGGAGATTAATTGGAGTTACATAGAGTTTGTCGATAATCAGGATGTTTTGGATCTGATTGAGAAGAAACCTGGAGGAATAAT TTCTCTTCTGGATGAAGCCTGCATGTTTCCAAAGTCCACCCATGAAACTTTTGCTCAGAAGCTGTATCAGACATTTAAAAACAACAAGCGTTTTATCAAA CCAAAGCTCTCACGTACAGATTTCACTATCTTACACTATGCAGGGGAGGTGAATTATCAAGCCAATCAGTTTTTGGATAAAAATAAGGATTATGTTATAG CTGAACATCAAGCTCTGATGACTGCTTCTCAATGCCACTTTGTTGTGGGATTGTTCCCTACACTTAAAGAAGAATCATCGAAGTCATCTAAGTTTTCTTC TATTGGTTCTCGGTTCAAGCTACAACTTCAATCTCTGATGGAGACCTTGAGTGTGACGGAACCCCACTACATTAGATGTGTGAAGCCTAATAATGTTCTG AAGCCTGCTATTTTTGAGAGCGTCAATATCATTCACCAGTTACGTTGTGGGGGTGTACTTGAGGCAATTAGGATTAGCTGTGCTGGATACCCTACAAGGC GAACCTTTTATGAGTTTCTTAATCGTTTTGGTCTTCTGGCTCCAGAAGTCTTAGATGGAAATTATGATGATAAGGTTGCATGCCAAATGATTCTCGATAA AAAGGGACTGAAAGGATACCAGATAGGCAAGACAAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAGTTGGATGCTCGGAGAGCAGAGGTACTTGGAATT GCAGCCAGAATCATCCAGCGACAAATCCGCACTTATTTTGCTCGCAGGGAGTTCATTTCTTTGAGAAAAGCAGCTATGGAGCTTCAGTCTTATATACGAG GTGATAAGGCCCGCAAAGTGTTCGAGCATTTGAGGAGGGAAGCAGCTTCTGTGAAGATTCAGAAAAATTTCCGCCTCTTTGTTGCCAGAAAATCGTACTT AACAAAACGATCATCTGCAATCACATTGCAGACTGGATTAAGGGCAATGGCTGCACGCAATGAGTTCAGGTTCAGAAAACAAACTAAAGCTGCCACTGTA ATTCAGGCTCACTGGCGTAGCTATCAAGCTCGTTCCTATTATAAACATCTTAAGAAGGCTACAATTGCTACACAATGTGGATGGAGATGCAGAGTTGCTA GAAGAGAGCTCAGAATGCTAAAAATGGCTGCTAGAGACACTGGAGCTCTTAAAGAAGCAAAGGATAAGTTGGAAAAGCGTGTTGAAGAACTTACGTGGCG CCTTCAATTGGAAAAACGACTGAGGACTGATCTCGAGGATGCTAAATCTCAAGAAGTTGCCAAGCTTCAAGATGCACTAAAAGTTATGCATTCACAAGTT GAAGAGGCCAAGGCTTTGGTTGTTAAGGAACAGGAGGCAGCACAAAAAGCTATTCGAGAAGCACCTCCAGTTATAAAGGAAACCCCTGTTATAGTTGAAG ACACAGAGAAAATCCACTCTTTAACTGCTAAAGTTGAAAACTTGGAGGCTTTACTAGTCTCTCACAGACAAGAAGCAGAAGAGGCCAAACAAGCATGCGC AGCCGCCCAGTCCCGGAGTGAACAGCTTAGTAAGAAGCTCCAAGATTCAGAAAAGAAGGTGGATCAACTTCAAGATTCAGTTCAAAGATTTGAAGAGAAA GTATCCAACTTAGAGTCAGAGAATCAAGTTCTTCGCCAACAAGCACTTGCTATATCACCAACTGCAAAAGCATTGGCTATTAGACCAAAGACTACAATCA TTCAAAGAACCCCAGAGAATGGAAGTATTCCACATTCAGAAGCAAGGAGAACACCGGAGTCAATACTGGCTTTGCCTGGCACACGGGAGGCTGAAAATGA GGACAAGCCCCAGAAGTCTCTTAATGAAAAGCAGCAGGAAATACAAGACCTGCTACTCAAATGTGTATCTCAAGATCTTGGATTCTCTGGCGGCAGACCT GTTGCTGCTTCTCTGATATACAAATGCCTTCTTCAGTGGAGATCGTTTGAGGTTGAAAGGACTAGTATTTTTGACCGCATTATTCAGGCGATTGGCTCTG CCATTGAGGCCCAGGATAACAACGATGTATTGTCTTATTGGCTTTCAAATTCGGCAACGCTCTTGTTGTTGCTTCAACGGACACTAAAAGCAACTGGTGC TGCTAGCTTAACTCCACAACGGCGAAGATCAACATCCTCTTCTCTGTTTGGGAGAGTATCCCAGGGATTCCGTGGTTCTCCACAAAGTGCCGGCTTCTCA TTCCTCAATGGCAGAGTGCTTGGAGGTTTGGAGGAGTTGCGACAAGTAGAAGCCAAATATCCTGCTTTGCTTTTCAAACAGCAGTTGACAGCTTTCTTGG AAAAGATATATGGAATGATAAGAGACAATTTGAAGAAAGAAATATCACCCCTGATTGGGTTGTGCATCCAGGCGCCACGGACATCAAGGGCTGGCTTAGC CAAGGGACGTTCTCAGGCTAATGCCATGGCTCAACAAGCTCTCATAGCTCATTGGCAAAGCATAGTGAAATGCCTGGACAATTGCTTGAAAACAATGCGA GCCAACTATGTACCCCCGTTCCTAGTTCGGAAGGTAATCACCCAGATATTCTCATTCATCAACGTTCAGTTATTTAACAGTCTTCTGTTGCGTCGAGAGT GTTGCTCATTTAGCAATGGAGAGTATGTAAAGACAGGGTTGGCTGAATTGGAACAGTGGTGCCATGATGCAACTGACGAGTTTGTAGGCCCAGCATGGGA GGAACTGAAACACATAAGACAAGCCGTCGGCTTTTTGGTGATACATCAGAAGCCAAAAAAGAACTTGAAAGAAATAACCACAGATCTTTGCCCAGTTTTG AGCATACAACAATTATACAGAATCAGTACCATGTACTGGGATGACAAATACGGGACACATAGTGTATCATCGGAGGTCATTTCCAACATGAGAATAATGA TGACAGAGGATACGAACAATGCTGTAAGCAGCTCGTTCTTATTGGATGACGATTCAAGCATACCATTTACTGTAGGTGATATCTCCAAGTCAATTGAGCA AGTAGAAGTTGCTGAGATTGAACCTCCACCTCTGATCCGTGAAAACTCAGGCTTCTCGTTCTTGTTACAACACACGGACTAA
AA sequence Show only first row Show all	>Lus10003315 pacid=23177784 polypeptide=Lus10003315 locus=Lus10003315.g ID=Lus10003315.BGIv1.0 annot-version=v1.0 MVLDTIMKTFENKCDGEMGPARQGGVYAAPDNIIVGSHVWIEDPKLAWIDGEVTRISGKDVHVQTTNGKNVVTSISKVFPKDTEAPPGGVDDMTKLSYLH EPGVLQNLATRYELNEIYTYTGNILIAVNPFQRLPHLYDTHMMEQYKGAAFGELSPHVFAVADAAYRAMINDGKSNSILVSGESGAGKTETTKMLMRYLA FLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPAEVREKYKLG SPKSFHYLNQSSCYELDGINDAHEYLETRRAMDIVGISEEEQAIFRVVAAILHLGNIEFAKGAEIDSSKLKDDKSRFHLDTTAELLRCDPKSLEDALIQR VMVTPEEIITRTLDPENALGSRDALAKTLYSRLFDWIVEKLNVSIGQDPDSKSIIGVLDIYGFESFKCNRQVISIVWLLFGADFCYSITLCWIGICSYTL LYVVYNTCFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIISLLDEACMFPKSTHETFAQKLYQTFKNNKRFIK PKLSRTDFTILHYAGEVNYQANQFLDKNKDYVIAEHQALMTASQCHFVVGLFPTLKEESSKSSKFSSIGSRFKLQLQSLMETLSVTEPHYIRCVKPNNVL KPAIFESVNIIHQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGLLAPEVLDGNYDDKVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVLGI AARIIQRQIRTYFARREFISLRKAAMELQSYIRGDKARKVFEHLRREAASVKIQKNFRLFVARKSYLTKRSSAITLQTGLRAMAARNEFRFRKQTKAATV IQAHWRSYQARSYYKHLKKATIATQCGWRCRVARRELRMLKMAARDTGALKEAKDKLEKRVEELTWRLQLEKRLRTDLEDAKSQEVAKLQDALKVMHSQV EEAKALVVKEQEAAQKAIREAPPVIKETPVIVEDTEKIHSLTAKVENLEALLVSHRQEAEEAKQACAAAQSRSEQLSKKLQDSEKKVDQLQDSVQRFEEK VSNLESENQVLRQQALAISPTAKALAIRPKTTIIQRTPENGSIPHSEARRTPESILALPGTREAENEDKPQKSLNEKQQEIQDLLLKCVSQDLGFSGGRP VAASLIYKCLLQWRSFEVERTSIFDRIIQAIGSAIEAQDNNDVLSYWLSNSATLLLLLQRTLKATGAASLTPQRRRSTSSSLFGRVSQGFRGSPQSAGFS FLNGRVLGGLEELRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLIGLCIQAPRTSRAGLAKGRSQANAMAQQALIAHWQSIVKCLDNCLKTMR ANYVPPFLVRKVITQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLAELEQWCHDATDEFVGPAWEELKHIRQAVGFLVIHQKPKKNLKEITTDLCPVL SIQQLYRISTMYWDDKYGTHSVSSEVISNMRIMMTEDTNNAVSSSFLLDDDSSIPFTVGDISKSIEQVEVAEIEPPPLIRENSGFSFLLQHTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	0	1
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	1.0	0.9436
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	1.4	0.9384
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	2.0	0.9334
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022839 [exp]	2.4	0.9365
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	3.3	0.9078
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011907 [exp]	3.5	0.9229
					Lus10029801 [exp]	5.9	0.8682
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	5.9	0.9272
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	6.0	0.9119
AT1G58230			binding (.1)		Lus10042866 [exp]	7.5	0.9193

Compare expression of checked genes

Lus10003315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.