Plant FIBer expression Database

Lus10003317 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29840 854 / 0 TS, MTO2 THREONINE SYNTHASE, METHIONINE OVER-ACCUMULATOR 2, Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
AT1G72810 830 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008462
[exp]
845 / 0 AT4G29840 777 / 0.0 THREONINE SYNTHASE, METHIONINE OVER-ACCUMULATOR 2, Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Lus10003316
[exp]
79 / 3e-18 AT1G72810 61 / 6e-13 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G199100
[exp]
869 / 0 AT1G72810 836 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Potri.003G033200
[exp]
864 / 0 AT1G72810 833 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00291 PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence
>Lus10003317 pacid=23177783 polypeptide=Lus10003317 locus=Lus10003317.g ID=Lus10003317.BGIv1.0 annot-version=v1.0
ATGGCGGCTTCATCGGCCCTTTTCCAATCCCCCAACCTCCACCACCGTCACCGCCACATCCTGCACTCACCCAAACCAACTCCTCGTTCCTTTTCATTCC
CCACACCCAGAGCTTCGATTTCTCCCTCCGATCCTTCGAAAACATCATCGCACACCACCAGTTCGATGAAAGGCTCCAGTATCAGGGATGAAGCCCGCCG
CCACAACCTCACTCACCCACAGCCCCCAAACAATTTCTCCGCCAAGTACGTTCCGTTCAACGCCGGACCCAACTCTACTGAGTTTTACTCCCTCGATGAG
ATCGTCTACCGATCACAATCCGGCGGCCTACTCGACGTCCAGCACGACATGGAGGCGCTGAAGGCCTTTCCAGGATCTTACTGGAAGTCTCTGTTTGATT
CCCGCGTGGGGAAGACGACTTGGCCGTATGGGTCAGGGGTTTGGTCCAAGAAAGAGTGGGTCTTGCCTGACATCTCCGACGATGATATCGTCAGTGCGTT
TGAAGGTAACTCGAATCTGTTCTGGGCTGAGAGGTATGGGAAGCAGTTTTTTGGTATGAACGATTTGTGGGTGAAGCATTGCGGGATCAGCCATACGGGT
AGCTTTAAGGATTTGGGGATGACTGTTTTGGTGAGTCAAGTGAATAGGTTGAGGAAAATGAACAAACCTGTTGTTGGAGTTGGCTGTGCTTCCACTGGCG
ACACTTCTGCTGCTTTATCTGCGTACTGTGCTTCTGCTGGTATTCCTTCTATTGTATTCTTGCCTGCAAATAAGATCTCCATGGCTCAATTGGTTCAGCC
AATTGCCAATGGAGCTTTTGTCCTCAGTATTGATACTGATTTTGATGGTTGCATGCAACTGATTAGGGAGGTTACAGCTGAATTGCCTATTTATTTAGCT
AACTCTCTAAACAGTTTGAGACTGGAAGGACAGAAAACTGCTGCCATTGAAATCCTGCAGCAGTTTGATTGGGAAGTCCCTGAATGGGTGATTGTTCCTG
GTGGAAACCTGGGCAATATTTATGCATTTTACAAAGGGTTTCATATGTGCAAAGAACTAGGGCTTGTGGATAGAATTCCTAGGCTAGTCTGTGCACAAGC
TGCAAATGCAAACCCTCTTTACTTGTACTACAAATCCGGGTGGAAAGATTTTAAGTCAGTGAAGGCCAGCAGTACTTTTGCGTCAGCTATTCAGATTGGG
GATCCGGTTTCGATTGATAGAGCTGTTTATGCTTTGAAAAAGTGTGATGGGATAGTGGAGGAAGCGACAGAGGAGGAACTAATGGATGCAATGGCACAAG
CTGATTCAACGGGAATGTTCATATGTCCACATACTGGTGTGGCATTGACTGCACTGAGTAAGCTAAGGAATGCTGGGATTATAGGTCCTAATGACAGGAC
TGTGGTGGTGAGTACTGCACACGGTTTGAAGTTTACGCAGAGTAAGATCGACTATCACTCCACCAATATAAAAGACATGGCTTGTAGGTTTGCTAATCCA
CCTGTGAATGTGAAGGCTGATTTTGGTTCAGTAATGGATGTTCTCAAGAAGTATCTGTGGAGTAATGCCCATTAG
AA sequence
>Lus10003317 pacid=23177783 polypeptide=Lus10003317 locus=Lus10003317.g ID=Lus10003317.BGIv1.0 annot-version=v1.0
MAASSALFQSPNLHHRHRHILHSPKPTPRSFSFPTPRASISPSDPSKTSSHTTSSMKGSSIRDEARRHNLTHPQPPNNFSAKYVPFNAGPNSTEFYSLDE
IVYRSQSGGLLDVQHDMEALKAFPGSYWKSLFDSRVGKTTWPYGSGVWSKKEWVLPDISDDDIVSAFEGNSNLFWAERYGKQFFGMNDLWVKHCGISHTG
SFKDLGMTVLVSQVNRLRKMNKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLA
NSLNSLRLEGQKTAAIEILQQFDWEVPEWVIVPGGNLGNIYAFYKGFHMCKELGLVDRIPRLVCAQAANANPLYLYYKSGWKDFKSVKASSTFASAIQIG
DPVSIDRAVYALKKCDGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALSKLRNAGIIGPNDRTVVVSTAHGLKFTQSKIDYHSTNIKDMACRFANP
PVNVKADFGSVMDVLKKYLWSNAH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G29840 TS, MTO2 THREONINE SYNTHASE, METHIONINE... Lus10003317
[exp]
0 1
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Lus10022446
[exp]
1.0 0.8905
AT5G07700 MYB ATMYB76 myb domain protein 76 (.1) Lus10019085
[exp]
2.2 0.8427
AT3G58610 ketol-acid reductoisomerase (.... Lus10022849
[exp]
3.9 0.8541
AT4G00231 MEE50 maternal effect embryo arrest ... Lus10007356
[exp]
4.9 0.8496
AT3G14240 Subtilase family protein (.1) Lus10017301
[exp]
5.1 0.8583
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Lus10032040
[exp]
6.9 0.8131
AT1G21710 OGG1, ATOGG1 ARABIDOPSIS 8-OXOGUANINE-DNA G... Lus10028539
[exp]
9.2 0.7993
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Lus10032041
[exp]
12.8 0.7932
AT4G17600 LIL3:1 Chlorophyll A-B binding family... Lus10001008
[exp]
13.0 0.8157
AT3G25580 Thioredoxin superfamily protei... Lus10013889
[exp]
14.1 0.8280

Lus10003317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.