Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45250 86 / 1e-20 Integral membrane protein hemolysin-III homolog (.1.2) AT4G38280 83 / 4e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022622 [exp] 249 / 3e-85 AT4G38280 110 / 2e-31 unknown protein Lus10022623 [exp] 184 / 3e-60 ND / Lus10023933 [exp] 148 / 5e-44 AT2G45250 106 / 4e-28 Integral membrane protein hemolysin-III homolog (.1.2) Lus10014432 [exp] 142 / 9e-42 AT2G45250 103 / 3e-27 Integral membrane protein hemolysin-III homolog (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166100 [exp] 120 / 2e-33 AT4G38280 106 / 4e-28 unknown protein Potri.004G205200 [exp] 116 / 6e-32 AT4G38280 100 / 6e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003319 pacid=23148032 polypeptide=Lus10003319 locus=Lus10003319.g ID=Lus10003319.BGIv1.0 annot-version=v1.0 ATGAGCTCAATGTGTCTTCAGATGGTTCAGCAAATGATGGAGAAAACAGAACCAGACTCGTCTGCTCATAAAGAGTTTCCTGTAAAGAAAGCAGCTTTGA GAGATGTTCAGAACCAAACTAGTTCTCACAGCTTCATCACTAGGTCTCCAGTAAGTAATAAGAAGAGTACTGGGAAAACCATGGATGCCCATACCTTCAA GGTCTCCGGCACCAAGAGACCCTCCCCCGAGCCGTCTCCGAAAAGCAATGCAGCTGCAAATGCTCAACAGCTCGTCTATGTTCGTGGGAAATCCAAAACC GAAATGAATCATCAACAACTGCTCAGTCACTTTTCGGATAAGGATTCAAAAGTTCCTCGATTTTCGGCCTTCGCACCTATTGGCAAGCCGAAACGTGTGC ATTGGGAGGAACGATATCGACAGTTACGAGTCTTGTTGAAGAAGCAAGGTGAATCAGATCATCAGGACTACATCCAAATGCTTCGATCGATCTCTTTTGT CGAGCTTAGTAGACACGCTGTTGAGTTGGAGAAACGATCCATTCAGCTCTCTCTTGAAGAAGGTAACCTTACTAGCCACGGCTGA
AA sequence Show only first row Show all	>Lus10003319 pacid=23148032 polypeptide=Lus10003319 locus=Lus10003319.g ID=Lus10003319.BGIv1.0 annot-version=v1.0 MSSMCLQMVQQMMEKTEPDSSAHKEFPVKKAALRDVQNQTSSHSFITRSPVSNKKSTGKTMDAHTFKVSGTKRPSPEPSPKSNAAANAQQLVYVRGKSKT EMNHQQLLSHFSDKDSKVPRFSAFAPIGKPKRVHWEERYRQLRVLLKKQGESDHQDYIQMLRSISFVELSRHAVELEKRSIQLSLEEGNLTSHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	0	1
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	1.4	0.9019
AT3G51300		ATRAC11, ROP1, ...	ARABIDOPSIS THALIANA RHO-RELAT...		Lus10014258 [exp]	1.7	0.8773
AT1G47740			PPPDE putative thiol peptidase...		Lus10003951 [exp]	2.0	0.8811
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	5.5	0.8589
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	7.5	0.8544
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	8.2	0.8622
					Lus10035688 [exp]	10.5	0.8620
AT5G58610			PHD finger transcription facto...		Lus10003352 [exp]	10.7	0.8013
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	11.0	0.8211
AT1G29270			unknown protein		Lus10007304 [exp]	11.2	0.8227

Compare expression of checked genes

Lus10003319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.