Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04740 55 / 6e-09 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT3G50360 52 / 1e-08 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT5G12180 52 / 8e-08 CPK17 calcium-dependent protein kinase 17 (.1) AT5G04870 51 / 1e-07 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT5G19360 51 / 1e-07 CPK34 calcium-dependent protein kinase 34 (.1) AT3G10660 50 / 3e-07 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT3G51850 49 / 5e-07 CPK13 calcium-dependent protein kinase 13 (.1) AT4G04695 49 / 8e-07 CPK31 calcium-dependent protein kinase 31 (.1) AT5G19450 48 / 1e-06 CPK8, CDPK19 calcium-dependent protein kinase 19 (.1.2) AT5G12480 48 / 1e-06 CPK7 calmodulin-domain protein kinase 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022624 [exp] 348 / 1e-124 AT4G04740 53 / 1e-08 calcium-dependent protein kinase 23 (.1.2) Lus10002075 [exp] 52 / 7e-08 AT4G04720 536 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10021248 [exp] 52 / 8e-08 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10036050 [exp] 51 / 2e-07 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1) Lus10013603 [exp] 50 / 2e-07 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10027032 [exp] 50 / 2e-07 AT2G31500 765 / 0.0 calcium-dependent protein kinase 24 (.1) Lus10000889 [exp] 50 / 3e-07 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10025570 [exp] 50 / 3e-07 AT2G31500 768 / 0.0 calcium-dependent protein kinase 24 (.1) Lus10006777 [exp] 50 / 4e-07 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165700 [exp] 289 / 3e-101 AT5G04870 57 / 8e-10 calcium dependent protein kinase 1 (.1) Potri.004G204700 [exp] 285 / 8e-100 AT5G12180 61 / 2e-11 calcium-dependent protein kinase 17 (.1) Potri.016G117200 [exp] 56 / 4e-09 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.005G138000 [exp] 54 / 5e-09 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.009G069200 [exp] 54 / 2e-08 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.006G101300 [exp] 53 / 3e-08 AT3G51850 977 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.002G088500 [exp] 50 / 8e-08 AT1G24620 99 / 2e-26 EF hand calcium-binding protein family (.1) Potri.001G097400 [exp] 51 / 1e-07 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 51 / 1e-07 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.008G014700 [exp] 51 / 1e-07 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10003320 pacid=23148034 polypeptide=Lus10003320 locus=Lus10003320.g ID=Lus10003320.BGIv1.0 annot-version=v1.0 ATGGAGAACACAGCGATGCTGAGAGAGTGGTTCGACCGAGTCGACTCAGAAAGAATCGGAAGCGTCACTGCAACTCAGCTGAAGAGTGCTTTAGCTGTCG GCAACCTTGAATTCCCTCCCTCAGTTGTTCAACAAATGATCAGGATGTATGATTTTGACAGAAATGGGACTTTGAGCTTTGATGAATTTGTTGCATTGAA CAAATTCCTCATAAAGGTTGGATCTTTCTCCTTTCAATTGGTTTCCATTCTGGTTCAACAAGCCTTCTCAGACCTAGAGAGGGATCGTGGCTATCTTGTT CCTGATGATGTGTACGAGGGATTGGTGAAACTTGGCTTCTCCCTTGACTCACCAGCTTTCTACACAGTGTGCGAGAGCTTTGATCAGAAGAAGAATGGGA AGTTTCGTCTGGATGACTTCATATCTCTTTGCATCTTTGTACATTCTGCAAGGAACCTTTTCGAGTCGTTTGATACAGCGAAGCAAGGAAGGATTAGTCT TGATATGAACCAGTTCATCTACTGCAATCCTAACTCTCTGAGAATTGCAGCTGCAAATTGCAGAATATGA
AA sequence Show only first row Show all	>Lus10003320 pacid=23148034 polypeptide=Lus10003320 locus=Lus10003320.g ID=Lus10003320.BGIv1.0 annot-version=v1.0 MENTAMLREWFDRVDSERIGSVTATQLKSALAVGNLEFPPSVVQQMIRMYDFDRNGTLSFDEFVALNKFLIKVGSFSFQLVSILVQQAFSDLERDRGYLV PDDVYEGLVKLGFSLDSPAFYTVCESFDQKKNGKFRLDDFISLCIFVHSARNLFESFDTAKQGRISLDMNQFIYCNPNSLRIAAANCRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Lus10003320 [exp]	0	1
AT4G35750			SEC14 cytosolic factor family ...		Lus10005640 [exp]	3.6	0.8028
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Lus10036441 [exp]	4.1	0.7178
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10035702 [exp]	16.5	0.6708
AT1G14990			unknown protein		Lus10035021 [exp]	19.4	0.7200
AT5G22920			CHY-type/CTCHY-type/RING-type ...		Lus10023914 [exp]	33.6	0.7058
AT1G33970			P-loop containing nucleoside t...		Lus10005301 [exp]	34.5	0.7017
AT3G26380			Melibiase family protein (.1)		Lus10006226 [exp]	42.2	0.7251
AT3G57790			Pectin lyase-like superfamily ...		Lus10026318 [exp]	43.6	0.7332
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10041379 [exp]	43.9	0.7374
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010096 [exp]	86.9	0.6528

Compare expression of checked genes

Lus10003320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.