Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36780 468 / 1e-161 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 464 / 3e-160 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36770 463 / 7e-160 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 452 / 2e-155 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT3G53160 449 / 1e-154 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G36750 446 / 2e-153 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36790 436 / 3e-149 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT3G53150 420 / 6e-143 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G15480 380 / 1e-127 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 378 / 5e-127 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016268 [exp] 675 / 0 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 655 / 0 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10012011 [exp] 634 / 0 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10014437 [exp] 607 / 0 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10023939 [exp] 468 / 5e-162 AT2G36780 485 / 7e-169 UDP-Glycosyltransferase superfamily protein (.1) Lus10014404 [exp] 446 / 8e-153 AT2G36760 507 / 4e-177 UDP-glucosyl transferase 73C2 (.1) Lus10023893 [exp] 443 / 3e-152 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10023894 [exp] 434 / 3e-148 AT2G36780 516 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014403 [exp] 429 / 1e-146 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048700 [exp] 469 / 1e-162 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.006G120600 [exp] 466 / 5e-161 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.016G097400 [exp] 460 / 4e-158 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G302300 [exp] 384 / 4e-129 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.001G302400 [exp] 384 / 7e-129 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 380 / 1e-127 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098400 [exp] 380 / 1e-127 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303700 [exp] 380 / 1e-127 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 380 / 2e-127 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 377 / 3e-126 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003322 pacid=23148031 polypeptide=Lus10003322 locus=Lus10003322.g ID=Lus10003322.BGIv1.0 annot-version=v1.0 ATGGATTCAGATCCAACAACCACCGTCAAAACCCAGCAACCTCATTTCGTTCTCTTCCCATTCATGGCGCAAGGCCACATGATTCCCATGGTCGACATCG CCAAGATCCTAGCTAGCCATGGAGGAGGAGAACTAATCATGGTCACAATCATCACCACCCCGGTCAACGCAGCTCGATTCAAACCCTCTCTCTCGGGCCA CGACAGAATCGAGCTGGTCGAGCTGCGGTTCCCATGCATCGAAACAGGGCTACCGGAGGGTTGCGAGAACGTAGACATGCTCCCTTCGTTCCACTACCTC CCTCGCCTGTACAAGGCCGCCGCCATGATGGAATCTCAGGTAGAGGTCATCAAGCTGTTCGAGAATACGAGGGCAAAGCCTACTTGTATCGTCTCTGATG CATGGTTGCCGTACACTAGTAACGTGGCGAACAAGTTTGGCGTGCCTAGGATTAGCTTCCATGGAACTGGCTGCTTCTCCCTCTTGTGTATACACTGTGT CAAGATCCACATGGAGGAAGTGGATCGGAGAGCCAGGTCCAGTAATGGAGGCTTCGTCGTCCCTGGAATGCCCGGGGGAATCGAGTTTACCAGAGTTCAG TTGCCACTACGACCCAGGATGGCAGGACAGGCAAACCTCAGAAATGAGTTTGGAGACCAAATGGCGAAAGCAGAGTCAGAAGCTTACGGAGTGATCGTGA ACAGTTTTGAGGAACTCGAGCCGGAGTATTCCTTGGAGTACAGGAAATCGAAGCAAGGCAAAGTATGGTGTGTCGGACCGGTTTCCTTAACCAACCAGGA CGAATTGGAAAAACTTCAGAGAGGAAACAACAACAACACTTCTGATCTCTCGCATTGGTCTCTCGTTTGGCTAAACACTAAAGAACCGCAATCGGTCGTG TATGCGAGCTTAGGGTCGATATGCAACCTCTCGACCCAACAATTGATCGAGCTGGCACTAGGATTGGAAGCGTCTAAAATTCCCTTCATTTGGGTGATCC GTGAGACGGGGACCACGCAGGACCTTTATAGATGGATTGTGGATGAAGGGTTTGAGGAAAGGGTTGCAGGGAGAGGGGTGGTGATTCGAGGGTGGGCACC TCAAGTCTCAATATTGTCTCACCGTTCAATCGGAGGGTTCCTGACCCATTGCGGGTGGAACTCTTGTTTGGAAGGGATTAGTTCCGGGATTCCCCTTGTT ACATGGCCACTTTTTGGTGATCAGTTCAGTAATGAGAAACTAATCGTCGAGGTGGCAAAGATAGGAGTGAGGGTAGGTGCAGTACGCCCGACGTTTTCGG ATGGAAAGGAAGAGACCGATGTGAGCGTGAAGAGAGGAGATGTGGAGAGAGCAGTGAGATGGGCAATGGAGGAAGGAAATGGAAGGAGGAAGAGAGCCAT GGAGCTCGGCGAAATGGCGAGGAAAGCTATGGAGAGTGGTGGATCTTCTTATAGGAATCTTTCCATGTTTATTGAAGACATTGTCAAACATCAAGATGGG TAG
AA sequence Show only first row Show all	>Lus10003322 pacid=23148031 polypeptide=Lus10003322 locus=Lus10003322.g ID=Lus10003322.BGIv1.0 annot-version=v1.0 MDSDPTTTVKTQQPHFVLFPFMAQGHMIPMVDIAKILASHGGGELIMVTIITTPVNAARFKPSLSGHDRIELVELRFPCIETGLPEGCENVDMLPSFHYL PRLYKAAAMMESQVEVIKLFENTRAKPTCIVSDAWLPYTSNVANKFGVPRISFHGTGCFSLLCIHCVKIHMEEVDRRARSSNGGFVVPGMPGGIEFTRVQ LPLRPRMAGQANLRNEFGDQMAKAESEAYGVIVNSFEELEPEYSLEYRKSKQGKVWCVGPVSLTNQDELEKLQRGNNNNTSDLSHWSLVWLNTKEPQSVV YASLGSICNLSTQQLIELALGLEASKIPFIWVIRETGTTQDLYRWIVDEGFEERVAGRGVVIRGWAPQVSILSHRSIGGFLTHCGWNSCLEGISSGIPLV TWPLFGDQFSNEKLIVEVAKIGVRVGAVRPTFSDGKEETDVSVKRGDVERAVRWAMEEGNGRRKRAMELGEMARKAMESGGSSYRNLSMFIEDIVKHQDG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	0	1
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	1.4	0.9687
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	1.4	0.9704
AT2G23770			protein kinase family protein ...		Lus10016794 [exp]	4.4	0.9563
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10027121 [exp]	5.7	0.9586
AT3G26100			Regulator of chromosome conden...		Lus10036945 [exp]	5.9	0.9675
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	6.9	0.9585
AT5G65030			unknown protein		Lus10026049 [exp]	7.3	0.9632
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	8.1	0.9686
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	8.5	0.9668
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Lus10035945 [exp]	9.4	0.9494

Compare expression of checked genes

Lus10003322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.