Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36780 493 / 2e-171 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 493 / 2e-171 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36770 476 / 4e-165 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 469 / 5e-162 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36750 461 / 3e-159 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36790 456 / 5e-157 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT3G53160 450 / 1e-154 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT3G53150 437 / 3e-149 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G15480 380 / 3e-127 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 375 / 1e-125 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016268 [exp] 729 / 0 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10012011 [exp] 684 / 0 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 655 / 0 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10014437 [exp] 632 / 0 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10022628 [exp] 553 / 0 AT2G36780 310 / 1e-101 UDP-Glycosyltransferase superfamily protein (.1) Lus10023939 [exp] 471 / 5e-163 AT2G36780 485 / 7e-169 UDP-Glycosyltransferase superfamily protein (.1) Lus10023893 [exp] 470 / 1e-162 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10014403 [exp] 454 / 4e-156 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10023894 [exp] 436 / 4e-149 AT2G36780 516 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120600 [exp] 475 / 2e-164 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.012G048700 [exp] 472 / 2e-163 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.016G097400 [exp] 461 / 4e-158 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G303700 [exp] 405 / 2e-137 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 400 / 2e-135 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G302300 [exp] 398 / 3e-134 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.009G098400 [exp] 392 / 6e-132 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302400 [exp] 391 / 8e-132 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 387 / 4e-130 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 385 / 2e-129 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003323 pacid=23148028 polypeptide=Lus10003323 locus=Lus10003323.g ID=Lus10003323.BGIv1.0 annot-version=v1.0 ATGGGTTCACTAACCACAACCACCAAAGCTCCAAACCTTCATTTCGTTCTCTTCCCATTCATGGCACAAGGCCATATGATTCCCATGGTCGAAATTGCCA AGCTCCTCGCGAGCTGCGGGGCCATGGCCACGATAGTCACCACCCCGCTCAACAGTGCCCGGTTTCGGTCCTCTCTCAAACGTGCCACCGACGAGTTGGG GCTCCTAATCAACCTCGTCGAGCTACCCTTCCCCTGTGTCGAAGCGGGGCTCCCAGAAGGGTGCGAGAATGCCGATACGCTCCCTTCCTTTGCATATCTT GGCCACATGGCGAAGGCGGCAGCCATGATGGAGCCACAAGTTGAGTCCCTGTTCGAAAACATGAGGGTAAAACCCGCTTGCATCATCTCGGATTTTGTTT TGCCGTACACCAATAACGTGGCGAAGAAGTTTAACGTCCCGAGGATTAGCTTCCATGGGTTTAGCTGCTTCAACCTCTTCTGTATGCACTGCATCAGGCT CCACGAGGACGAAATAGTGAGGACTGTGGGCTACTCCGCTCATGAATATTTCGTCCTCCCTGGACTGCCTGGGGAAATCAAGTACACCAAGGTTCAGATG CCGATAGAAATCAGGGAGCCTGGAAATGACGATCCTAAATACGAGTTTCATGATTCCGTGGAGAAAGCTGAGTCTGAAGTGTACGGTGTGATCGTGAATA GCTTCGAAGCACTTGAGTCCGAGTACTTCTCGGGTTACAAGAACTCGAAACAGGGCAAAGTATGGTGCGTCGGACCAGTTTCCTTAACCAATCTCCACGA CTTGGACAAACTCCAAAGAGGGACCAGCGACATTTCTCTCGCACACCACTCCCTCGATTGGCTAAACACTAAAGAACCCAAGTCCGTCCTCTATGTTTGC TTAGGCTCGATATGCAACCTCTCGTCTGAACAGCTGATGGAGCTAGCACTGGGTCTCGAGGCCTCAGGGAAGCCCTTTGTCTGGGCTTTCCGTGACACGG AGATCACAAAGGACCTCTACAAATGGATTGTGGATGATGAATATGAGGACCGGGTAGCGGGGAGAGGGTTGGTGATCCGAGGATGGGTCCCTCAGGTTTC GATCCTGTCCCATGACTCGATAGGAGGGTTCTTGACACACTGTGGATGGAACTCTTCACTAGAAGGGATTAGTGCAGGGATTCCCCTCATTACGTGGCCA CTGTTCGCTGACCAGTTCAGTAATGAGAAGTTGCTCGTGGAGGTGTTGGGGATTGGAGTGAAGGTTGGAGCGGAGAGGCCGACATATCATGTGGAATTAG GAAAGGAAGACAAGGAGGTGAGAGTGAGGAGAGGAGATGTGGAGAGAGCGGTGAGGCTGGTGATGGAGGAGAGCGGAGAGGAAGGAGATGGGAGGAGGAA TCGAGCTAAGGAGCTCGCGGAAATGGCGAAGAGAGCCATGGAGAGTGGTGGATCTTCTCATCGGAGTGTTGGCATGCTGATTGATGATATTATGAAGCAT CAAGAGGAGAAGGAATACTGCAAAAAACTCTAA
AA sequence Show only first row Show all	>Lus10003323 pacid=23148028 polypeptide=Lus10003323 locus=Lus10003323.g ID=Lus10003323.BGIv1.0 annot-version=v1.0 MGSLTTTTKAPNLHFVLFPFMAQGHMIPMVEIAKLLASCGAMATIVTTPLNSARFRSSLKRATDELGLLINLVELPFPCVEAGLPEGCENADTLPSFAYL GHMAKAAAMMEPQVESLFENMRVKPACIISDFVLPYTNNVAKKFNVPRISFHGFSCFNLFCMHCIRLHEDEIVRTVGYSAHEYFVLPGLPGEIKYTKVQM PIEIREPGNDDPKYEFHDSVEKAESEVYGVIVNSFEALESEYFSGYKNSKQGKVWCVGPVSLTNLHDLDKLQRGTSDISLAHHSLDWLNTKEPKSVLYVC LGSICNLSSEQLMELALGLEASGKPFVWAFRDTEITKDLYKWIVDDEYEDRVAGRGLVIRGWVPQVSILSHDSIGGFLTHCGWNSSLEGISAGIPLITWP LFADQFSNEKLLVEVLGIGVKVGAERPTYHVELGKEDKEVRVRRGDVERAVRLVMEESGEEGDGRRNRAKELAEMAKRAMESGGSSHRSVGMLIDDIMKH QEEKEYCKKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	0	1
AT3G18430			Calcium-binding EF-hand family...		Lus10029670 [exp]	1.7	0.9465
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	2.0	0.9558
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	2.8	0.9554
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10034292 [exp]	2.8	0.9378
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011288 [exp]	5.5	0.9154
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10041479 [exp]	6.0	0.9189
AT2G15020			unknown protein		Lus10013880 [exp]	6.7	0.9317
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	8.1	0.9282
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10027363 [exp]	8.7	0.9119
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	9.2	0.9251

Compare expression of checked genes

Lus10003323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.