Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41080 597 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 368 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 364 / 2e-116 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G23330 362 / 3e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 358 / 1e-115 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 354 / 4e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 349 / 3e-111 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G37170 347 / 7e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 344 / 1e-110 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G21090 338 / 1e-108 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022629 [exp] 1147 / 0 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003325 [exp] 793 / 0 AT2G41080 570 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 401 / 3e-126 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 385 / 1e-124 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10001617 [exp] 378 / 1e-123 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030581 [exp] 392 / 1e-122 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10036921 [exp] 355 / 8e-114 AT4G37170 806 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024381 [exp] 351 / 3e-111 AT3G23330 777 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 345 / 1e-109 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075000 [exp] 762 / 0 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 391 / 3e-127 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G208000 [exp] 385 / 6e-126 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 384 / 2e-125 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 370 / 7e-119 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G111300 [exp] 367 / 2e-116 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 355 / 2e-112 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 351 / 4e-112 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 354 / 7e-112 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 352 / 3e-111 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003324 pacid=23148044 polypeptide=Lus10003324 locus=Lus10003324.g ID=Lus10003324.BGIv1.0 annot-version=v1.0 ATGGGCCAGCCATGTATCTCCGTCCTCCGTTTCTCCCGCCGGAATTTCTCCTCTGCATCAACTCCGTCCCCCCTTCACGAATTCACAAGCCTCTGCTATG GAGGACGAATCAAAGAAGCCTTCCACAAATTCAACTCCGAGATATGGAAAGACCCCGATCTCTTCTCCCACCTTATTCTCTCCTGCATTCCCACCAAGTC TCTCCTCCTCGGGAAGCAGCTCCATTCGTTGGTCCTCACTTCCGGCTACCGCAAAGAAAAATTCGTCACCAATCACCTCCTCAACATGTACTCCAAGCTC GGCGACTTGGGATCAGCCCTTTCCTGGTTCAACGGGCTTCCCAGGAGGAACGTCATGTCTGGTAACATTTTGATCAACGGCTATGTACAAGCTGGCGATT TGGAAGGTGCACGTAAGGTGTTCGACGAAATGCCTGAGAGAAATCTCGCCACTTGGAATGCTATGGTAACTGGCTCGATCCAGTTCGAGCATAACGAGGA TGGATTGGGGTTTTTTAGCAAAATGCATCGGTCTGGTTTTATGCCTGATGAGTTTGCTCTTGGTAGCGTACTTAGAGGCTGTGCTGGATTGAGAGCTTTG CATACCGGTAAGCAAGTTCATGACTATGTGATGAAATGTGGGTTTGAGTTACATTTAGTCGTCTGTAGCTCTTTGGCTCATATGTATATGCAAAGTGGAA GCTTGGAAGAAGGAGAGAAGATAATCAAATCAATGCCGATTCGTACTGTTGTCGCTTGGAATACTCTTATAGCAGGGAAAGCTCAGAACGGCTTCTCAGA AGGAGTTCTAGATCTCTACAACATGATGAAAATGTCAGGCTCCAGACCTGATAAGATCACATTCGTAAGCGTGATCAGTTCCTGCTCCGAAATTGCAACT CTTAGTCAGGGCCAGCAGATCCACGCTGAAGCGATCAAATTTGGCGCAGCCAATTCTGTTGTTGCAGTGAGCAGCTCACTGATCAGCATGTACTCGAAAT GCGGATGTCTCGAGGATTCCTCGGAAGTGTTCTCCGATTGTAACGATGGAGATAATGTGCTGTGGAGCTCCATGATTGCTGCTTATGGATTCCATGGCAA AGGAGAGGAAGCTATTCGATTGTTCGACGAGATGCAAGGGTTAGGCTTGGAGGCTAATGAAGTCACATTCTTGAGCTTGCTCTATGCTTGTAGCCACTGT GGAATGAAGGAAGAAGGAATGCGGTTTTTCGAACAGATGGAGAATCGGTTCGGTTTGGTAACGAGTGTGCAGCATCACACTTGTATGGTTGATCTGCTGG GTCGGTCGGGCCGGTTGGATGAAGCTGAGGATATGATAAGGTCAATGCCTGTGAAAGTCAAACCAGATGCTGCAATATGGAAAACTCTGTTATCCGCTTG TAAAATCCATAAAGATGCTGACATGGCGAAACGGATAGCTGGAGAAGTTCTGAAGCTTAAACCGGACGATGCAGCATCGTACGTACTGCTCGCAAATGCT CACGCATTCGCGAGGAGATGGACCGAAGTCTCGGAAGTGTGGAAGGAAATGAGACATAAGAATGTGAAGAAAGAGCCAGGTGTGAGCTGGCTGGAAGTGA AGAACAAGGTTCATCAGTTCTGTACGGCGGATAAGTACCATCCGGAATCGGAGGAGATTGAGGTGTATTTGAATGAGATGATTGAAGAGATCAAGGAGAA GAAAGGGTATGTTCCTGATACGGATTCTGTGATGCATGATATGTGTGTTGGTGAGAAAAGAGTATAA
AA sequence Show only first row Show all	>Lus10003324 pacid=23148044 polypeptide=Lus10003324 locus=Lus10003324.g ID=Lus10003324.BGIv1.0 annot-version=v1.0 MGQPCISVLRFSRRNFSSASTPSPLHEFTSLCYGGRIKEAFHKFNSEIWKDPDLFSHLILSCIPTKSLLLGKQLHSLVLTSGYRKEKFVTNHLLNMYSKL GDLGSALSWFNGLPRRNVMSGNILINGYVQAGDLEGARKVFDEMPERNLATWNAMVTGSIQFEHNEDGLGFFSKMHRSGFMPDEFALGSVLRGCAGLRAL HTGKQVHDYVMKCGFELHLVVCSSLAHMYMQSGSLEEGEKIIKSMPIRTVVAWNTLIAGKAQNGFSEGVLDLYNMMKMSGSRPDKITFVSVISSCSEIAT LSQGQQIHAEAIKFGAANSVVAVSSSLISMYSKCGCLEDSSEVFSDCNDGDNVLWSSMIAAYGFHGKGEEAIRLFDEMQGLGLEANEVTFLSLLYACSHC GMKEEGMRFFEQMENRFGLVTSVQHHTCMVDLLGRSGRLDEAEDMIRSMPVKVKPDAAIWKTLLSACKIHKDADMAKRIAGEVLKLKPDDAASYVLLANA HAFARRWTEVSEVWKEMRHKNVKKEPGVSWLEVKNKVHQFCTADKYHPESEEIEVYLNEMIEEIKEKKGYVPDTDSVMHDMCVGEKRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	0	1
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003325 [exp]	1.0	0.9399
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	1.4	0.8549
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	3.5	0.8382
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	4.9	0.8443
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043276 [exp]	6.9	0.8312
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	6.9	0.8532
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10028593 [exp]	7.5	0.8357
AT5G25500			unknown protein		Lus10002031 [exp]	8.9	0.8430
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10032787 [exp]	10.5	0.7906
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028836 [exp]	11.2	0.7471

Compare expression of checked genes

Lus10003324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.