Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41080 542 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 356 / 3e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G33170 360 / 1e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 347 / 3e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 345 / 3e-112 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 345 / 1e-111 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G18750 348 / 3e-111 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 344 / 9e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49710 342 / 2e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 344 / 4e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022629 [exp] 828 / 0 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003324 [exp] 773 / 0 AT2G41080 597 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 355 / 2e-116 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 366 / 5e-115 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038741 [exp] 352 / 9e-115 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 354 / 2e-114 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014211 [exp] 348 / 8e-114 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 355 / 2e-112 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 346 / 2e-112 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G075000 [exp] 617 / 0 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 373 / 4e-123 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 369 / 1e-120 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G001000 [exp] 362 / 3e-119 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G059400 [exp] 366 / 4e-118 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 360 / 2e-116 AT3G22690 582 / 0.0 unknown protein Potri.016G077700 [exp] 353 / 3e-116 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 353 / 6e-114 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 353 / 5e-113 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G012500 [exp] 348 / 1e-112 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003325 pacid=23148042 polypeptide=Lus10003325 locus=Lus10003325.g ID=Lus10003325.BGIv1.0 annot-version=v1.0 ATGCATCGGTCTGGTTTTATGCCTGATGAGTTTGCTCTTGGTAGCGTACTTAGAGGCTGTGCTGGATTGAGAGCTTTGCATACCGGTAAGCAAGTTCATG ACTATGTGATGAAATGTGGGTTTGAGTTACATTTAGTCGTCTGTAGCTCTTTGGCTCATATGTATATGCAAAGTGGAAGCTTGGAAGAAGGAGAGAAGAT AATCAAATCAATGCCGATTCGTACTGTTGTCGCTTGGAATACTCTTATAGCAGGGAAAGCTCAGAACGGCTTCTCAGAAGGAGTTCTAGATCTCTACAAC ATGATGAAAATGTCAGGCTCCAGACCTGATAAGATCACATTCGTAAGCGTGATCAGTTCCTGCTCCGAAATTGCAACTCTTAGTCAGGGCCAGCAGATCC ACGCTGAAGCGATCAAATTTGGCGCAGCCAATTCTGTTGTTGCAGTGAGCAGCTCACTGATCAGCATGTACTCGAAATGCGGATGTCTCGAGGATTCCTC GGAAGTGTTCTCCGATTGTAACGATGGAGATAATGTGCTGTGGAGCTCCATGATTGCTGCTTATGGATTCCATGGCAAAGGAGAGGAAGCTATTCGATTG TTCGACGAGATGCAAGGGTTAGGCTTGGAGGCTAATGAAGTCACATTCTTGAGCTTGCTCTATGCTTGTAGCCACTGTGGAATGAAGGAAGAAGGAATGC GGTTTTTCGAACAGATGGAGAATCGGTTCGGTTTGGTACCGAGTGTGCAGCATCACACTTGTATGGTTGATCTGCTGGGTCGGTCGGGCCGGTTGGATGA AGCTGAGGATATGATAAGGTCAATGCCTGTGAAAGTCAAACCAGATGCTGCAATATGGAAAACTCTGTTATCTGCTTGTAAAATCCATAAAGATGCTGAC ATGGCGAAACGGATAGCTGGAGAAGTTCTGAAGCTTAAACCGGACGATGCAGCATCGTACGTACTGCTCGCGAATGCTCACGCATTCGCGAGGAGATGGA CCGAAGTCTCGGAAGTGTGGAAGGAAATGAGACATAAGAATGTGAAGAAAGAGCCAGGTGTGAGCTGGCTGGAAGTGAAGAACAAGGTTCATCAGTTCTG TACGGCGGATAAGTACCATCCGGAATCGGAGGAGATTGAGGTGTATTTGAATGAGATGATTGAAGAGATCAAGGAGAAGAAAGGTGAGAAGTTGGCTGTA GCCTTTGGGCTTATGCGTAGTCCTCCTGGGGTGCCGATTAGGATTATGAAGAACTTGAGGATCTGTGGTGATTGTCATGTTGCGATGAGATTGATTTCTG AAGTCAGGGTGAGGGAGATTGTTGTTAGGGATGGTAGTAGGTTCCATCATTTTAAGGATGGCAAATGTTCTTGTGGAGATTACTGGTAG
AA sequence Show only first row Show all	>Lus10003325 pacid=23148042 polypeptide=Lus10003325 locus=Lus10003325.g ID=Lus10003325.BGIv1.0 annot-version=v1.0 MHRSGFMPDEFALGSVLRGCAGLRALHTGKQVHDYVMKCGFELHLVVCSSLAHMYMQSGSLEEGEKIIKSMPIRTVVAWNTLIAGKAQNGFSEGVLDLYN MMKMSGSRPDKITFVSVISSCSEIATLSQGQQIHAEAIKFGAANSVVAVSSSLISMYSKCGCLEDSSEVFSDCNDGDNVLWSSMIAAYGFHGKGEEAIRL FDEMQGLGLEANEVTFLSLLYACSHCGMKEEGMRFFEQMENRFGLVPSVQHHTCMVDLLGRSGRLDEAEDMIRSMPVKVKPDAAIWKTLLSACKIHKDAD MAKRIAGEVLKLKPDDAASYVLLANAHAFARRWTEVSEVWKEMRHKNVKKEPGVSWLEVKNKVHQFCTADKYHPESEEIEVYLNEMIEEIKEKKGEKLAV AFGLMRSPPGVPIRIMKNLRICGDCHVAMRLISEVRVREIVVRDGSRFHHFKDGKCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003325 [exp]	0	1
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	1.0	0.9399
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	2.8	0.8987
AT5G25500			unknown protein		Lus10002031 [exp]	4.6	0.8890
AT1G55890			Tetratricopeptide repeat (TPR)...		Lus10020073 [exp]	5.7	0.8737
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	6.0	0.8706
AT1G58330		ZW2	transcription factor-related (...		Lus10005041 [exp]	6.7	0.8727
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	6.9	0.8556
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	8.1	0.8485
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	8.5	0.8433
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	9.5	0.8630

Compare expression of checked genes

Lus10003325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.