Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35250 652 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32100 60 / 1e-09 ATPRR1 pinoresinol reductase 1 (.1) AT5G18660 58 / 4e-09 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G16720 51 / 8e-07 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT2G37660 50 / 1e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G13660 49 / 2e-06 ATPRR2 pinoresinol reductase 2 (.1) AT5G15910 41 / 0.0007 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022632 [exp] 758 / 0 AT4G35250 640 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012145 [exp] 59 / 2e-09 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10012143 [exp] 56 / 1e-08 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10007599 [exp] 55 / 6e-08 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1) Lus10010403 [exp] 54 / 6e-08 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10010846 [exp] 49 / 3e-06 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024383 [exp] 47 / 1e-05 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035719 [exp] 47 / 1e-05 AT5G10730 271 / 9e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033322 [exp] 47 / 2e-05 AT1G16720 874 / 0.0 high chlorophyll fluorescence phenotype 173 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183100 [exp] 654 / 0 AT4G35250 650 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G143000 [exp] 634 / 0 AT4G35250 642 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G133300 [exp] 57 / 6e-09 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133200 [exp] 57 / 7e-09 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.014G000400 [exp] 57 / 1e-08 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.003G100200 [exp] 53 / 1e-07 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.007G003500 [exp] 53 / 2e-07 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.006G086800 [exp] 49 / 2e-06 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 45 / 4e-05 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G118000 [exp] 45 / 6e-05 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10003328 pacid=23148049 polypeptide=Lus10003328 locus=Lus10003328.g ID=Lus10003328.BGIv1.0 annot-version=v1.0 ATGGCATTACGCCTTCCAGCTCAGCTCGCCAACGGCGGAGGACGCCTCCCCCACCAGCTCCCCGCCGTTTCATCGCCTTCTTCCCTCTCCCGGCGCTCCA ATTTCGCTCCAAAAACCCTCTCTCTATTCTCCGCAGGGAGTCGATACGGCCGGCTGACGGTGAGCTGCAGTACTTCGGCGGCGGCGAATTTGGCGCCGGG AACTCCCGTCCGGCCGACGAGCATCCTTGTTGTCGGGGCAACAGGGACTCTCGGTAGGCAAATCGTGCGGAGAGCACTCGATGAAGGGTATGAAGTCCGG TGCCTTGTCAGGCCTCGTCCTGCTCCGGCGGATTTCCTCCGTGATTGGGGCGCCACTGTCGTCAATGGGGATCTGAGCAGGCCGGAGACGATTCCGGCGA CATTGGTTGGAGTTCATACGATTATTGATTGCGCCACCGGCCGGCCAGAAGAGCCCATCAAAACGGTAGATTGGGAAGGGAAAGTGGCACTGATCCAGTG TGCAAAGGCAATGGGGATACAAAAGTACGTGTTCTACTCGATCCACAACTGCGACAAGCATCCAGAGGTTCCATTAATGGAGATCAAGTACTGCACTGAG AAGTTCCTCAAGGACTCTGGCCTTCCTCACATCACCATACGCCTATGTGGCTTCATGCAAGGTCTAATCGGGCAATACGCAGTGCCTATTCTCGAGGAGA AGTCCGTGTGGGGCACCGACGCCCCCACACGAATCGCCTACATGGACACCCAAGATATAGCACGGTTGACTTTCATAGCGTTGAGGAACGAGAAGATGAA CGGAAAGCTCCTGACATTTGCCGGTCCTCGAGCTTGGACGACACAAGAGGTGATAGCATTGTGTGAGAGACTTGCGGGGCAAGATGCCAACGTGACCACG GTCCCGGTCTCGATCCTGAGGTTCACCCGGCAACTCACTCGGATTTTCGAATGGACAAGTGATGTCGCGGACCGGCTAGCATTCTCAGAGGTGCTGTCGA GCGACACGGTATTCTCGGTCCCGATGGGGGAGACGTACAGCATGCTAGGGGTAGATCAGAAGGAGATTGCGTCACTGGAGAAGTACTTGCAGGACTACTT CTCTAATATTTTGAAGAAGTTGAAGGACCTCAAAGCTCAGTCTAAGCAATCGGACATTTACTTCTGA
AA sequence Show only first row Show all	>Lus10003328 pacid=23148049 polypeptide=Lus10003328 locus=Lus10003328.g ID=Lus10003328.BGIv1.0 annot-version=v1.0 MALRLPAQLANGGGRLPHQLPAVSSPSSLSRRSNFAPKTLSLFSAGSRYGRLTVSCSTSAAANLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVR CLVRPRPAPADFLRDWGATVVNGDLSRPETIPATLVGVHTIIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTE KFLKDSGLPHITIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKMNGKLLTFAGPRAWTTQEVIALCERLAGQDANVTT VPVSILRFTRQLTRIFEWTSDVADRLAFSEVLSSDTVFSVPMGETYSMLGVDQKEIASLEKYLQDYFSNILKKLKDLKAQSKQSDIYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10003328 [exp]	0	1
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	1.4	0.9770
AT2G36895			unknown protein		Lus10023001 [exp]	2.8	0.9504
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10018163 [exp]	3.0	0.9586
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	3.2	0.9642
AT1G74730			Protein of unknown function (D...		Lus10042179 [exp]	4.5	0.9582
AT3G27925		DEGP, DegP1, DE...	DegP protease 1 (.1)		Lus10008781 [exp]	4.6	0.9541
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	5.9	0.9580
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	6.3	0.9444
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10035696 [exp]	6.5	0.9323
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	6.7	0.9490

Compare expression of checked genes

Lus10003328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.