Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35230 733 / 0 BSK1 BR-signaling kinase 1 (.1) AT5G59010 541 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT1G50990 520 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT3G54030 518 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G63500 511 / 4e-180 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G46570 508 / 6e-179 BSK2 BR-signaling kinase 2 (.1) AT5G41260 503 / 5e-177 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 501 / 3e-176 BSK3 BR-signaling kinase 3 (.1) AT2G17090 437 / 1e-151 SSP SHORT SUSPENSOR, Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 435 / 4e-150 Protein kinase protein with tetratricopeptide repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021823 [exp] 679 / 0 AT4G35230 802 / 0.0 BR-signaling kinase 1 (.1) Lus10034573 [exp] 582 / 0 AT4G35230 778 / 0.0 BR-signaling kinase 1 (.1) Lus10040719 [exp] 535 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10016454 [exp] 521 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10027743 [exp] 519 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 518 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 515 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10031967 [exp] 508 / 2e-178 AT5G46570 779 / 0.0 BR-signaling kinase 2 (.1) Lus10008530 [exp] 506 / 6e-178 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182800 [exp] 760 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 758 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1) Potri.002G011800 [exp] 724 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1) Potri.005G249300 [exp] 719 / 0 AT4G35230 836 / 0.0 BR-signaling kinase 1 (.1) Potri.009G039500 [exp] 548 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.001G246400 [exp] 543 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.006G093900 [exp] 531 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.014G179300 [exp] 527 / 0 AT5G46570 814 / 0.0 BR-signaling kinase 2 (.1) Potri.016G105800 [exp] 527 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.002G158400 [exp] 523 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10003329 pacid=23148053 polypeptide=Lus10003329 locus=Lus10003329.g ID=Lus10003329.BGIv1.0 annot-version=v1.0 ATGGATGCATTTGAGGCAGCTTTTCTGGTTCCATTTGCAGAAGCAGAACCCATCAATTCAAACTTTCAAACAGAGGAAGCTTGGGGAGTTGGGAAGTTGA GGCATGAGAGGTTGGCAAATTTGATAGGGTATTGCTGTGATGGAGATGAGAGGCTGCTTGTTGCTGAGTTCATGACTAATGATACTCTTGCTAAGCACTT GTTCCATTGGGAAAATCAAACCATAGAATGGTCCATGCGTTTAAGGGTCGCCCTGTACATAGCTGAAGCTCTAGATTATTGTAGCTCTGAGGGTCGTCCT TTGTACCACGATTTGAATGCCTATAGAGTACTCTTCGACGAGGATCGAGATCCGCGTCTATCCTGTTTTGGCTTGATGAAAAACAGTAGGGATGGGAAGA GTTACAGTACGAATCTGGCCTACACCCCTCCCGAGTACCTAAAAAACGGAAGGGTTACTCCAGAAAGTGTTACTTACAGTTTCGGCACTGTCCTCCTTGA TTTACTAAGTGGAAAGCACATCCCTCCAAGTCATGCCCTTGACATGATAAGAGGGAAAAACATCATTCTTTTGATGGATTCTCACTTGGAAGGGAACTTC TCTACAGAAGAAGCCACCACAGTCGTCGGTCTTGCCTCTCAATGTTTGCAGTACGAACCTCGGGAGAGGCCTAGCACGAAGGAACTCGTCGATACTCTTT CTCCTTTGCAATCAAAGCCTGATGTTCCATCAAAAGCGATGTTGGGAACATCGAAACACGATGAGGCACCACCGATGACACCACAGCGACCTCGCTCACC GATGGGGGAGGCATGTTCGAGGATGGACCTTACCGCAATCCACCAGATATTAGTAATGACACATTACAAAGACGACGAAGGAACAAACGAGTTATCTTTC CAAGAATGGACACAACAAATGCGAGACATGCTCGAGTCGAGAAAGAGGGGGGATTTCGCGTTTCGGGATAAAGATTTCAAAACTGCCATTGATTGTTATT CACAGTTCATAGACGTAGGAACGATTGTTTCGCCCACAGTTTTCGCTCGACGAAGTCTGTGTTACCTGTTATCTGATCAGCCGGATGCCGCCCTTCGAGA CGGGATGCAAGCACAATGCGTGTATCCAGATTGGCCGACTGCATTCTACATGCAGTCGGGCGCCATGCAATCGGTCGCGCTGGCAAAGCTGAACATGCAC ACGGACGCAGCCGATATGCTGAATGAAGCTACTGCACTTGAAGAAAAGAAGCAAAGGGGGAAAGGTTCATAA
AA sequence Show only first row Show all	>Lus10003329 pacid=23148053 polypeptide=Lus10003329 locus=Lus10003329.g ID=Lus10003329.BGIv1.0 annot-version=v1.0 MDAFEAAFLVPFAEAEPINSNFQTEEAWGVGKLRHERLANLIGYCCDGDERLLVAEFMTNDTLAKHLFHWENQTIEWSMRLRVALYIAEALDYCSSEGRP LYHDLNAYRVLFDEDRDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLKNGRVTPESVTYSFGTVLLDLLSGKHIPPSHALDMIRGKNIILLMDSHLEGNF STEEATTVVGLASQCLQYEPRERPSTKELVDTLSPLQSKPDVPSKAMLGTSKHDEAPPMTPQRPRSPMGEACSRMDLTAIHQILVMTHYKDDEGTNELSF QEWTQQMRDMLESRKRGDFAFRDKDFKTAIDCYSQFIDVGTIVSPTVFARRSLCYLLSDQPDAALRDGMQAQCVYPDWPTAFYMQSGAMQSVALAKLNMH TDAADMLNEATALEEKKQRGKGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	0	1
					Lus10033126 [exp]	1.0	0.8684
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10028251 [exp]	3.9	0.8259
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	4.5	0.8058
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10036141 [exp]	4.9	0.8085
AT5G23750			Remorin family protein (.1.2)		Lus10024514 [exp]	5.7	0.7698
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042127 [exp]	6.0	0.8083
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	6.7	0.7889
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10041253 [exp]	7.0	0.8085
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	7.1	0.8372
AT2G31130			unknown protein		Lus10013926 [exp]	9.2	0.8123

Compare expression of checked genes

Lus10003329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.