Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71890 206 / 2e-64 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G22710 189 / 7e-58 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT2G14670 179 / 7e-54 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 178 / 1e-53 ATSUC6 sucrose-proton symporter 6 (.1) AT5G06170 177 / 4e-53 ATSUC9 sucrose-proton symporter 9 (.1) AT1G66570 175 / 1e-52 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT1G71880 172 / 2e-51 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT2G02860 147 / 6e-42 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) AT1G09960 112 / 5e-29 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007702 [exp] 253 / 1e-82 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10029766 [exp] 192 / 9e-59 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10009428 [exp] 176 / 5e-54 AT1G22710 471 / 1e-164 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028616 [exp] 176 / 2e-52 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 175 / 3e-52 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10017910 [exp] 174 / 8e-52 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10014821 [exp] 166 / 1e-49 AT1G71890 532 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 165 / 2e-48 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028614 [exp] 163 / 1e-47 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G085800 [exp] 189 / 1e-57 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.013G115200 [exp] 188 / 3e-57 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.008G148100 [exp] 149 / 4e-42 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.010G093600 [exp] 145 / 1e-40 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.002G106900 [exp] 115 / 4e-30 AT1G09960 674 / 0.0 sucrose transporter 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003330 pacid=23148029 polypeptide=Lus10003330 locus=Lus10003330.g ID=Lus10003330.BGIv1.0 annot-version=v1.0 ATGGGCAGAGAAGTGTACGGAGGAGTTTCGAACGGGTCACCGGTTCAGGTCCATCTCTACGACCAAGGAGTCCGGGCCGGGTCGTTAGGGTTGATGATCA ATTCGATCGTCCGTTTGTTCTTCTCGCTGGCCATCGATCCCTTGGCGGGAAAATTGGGAGTGAAATTGTTATGGGGAGGCGTGAATTTAATCCTCGGAAT CTGCCTCGCGATGACGGTGGTGATCACCAAAGCGGCGGAATCGGAGCGGCGACTTGGCGGAGTGGAGGAGCCTTCGTTTGGGATTAAGATCGGCGCGATA GCGTTGTTCGCGATATTGGGGGTACCGCTGGCGGTGACGTTCAGCATTCCGTGCGCGATGGCGTCGATCTACTCGCAACGTTCCGGCGCGGGGCAGGGAT TGTCGATGGGAATTGTAAATTTGGCCATATGTCTGCCGCAAATGCTGGTTTCGATAGTGAGTGGGCCGCTTGACGCTGCCTTCGGCGGTGGGAATTTGCC GGCGTTTCTGGTCGGAGCTGTGGTGGCGGTCGTGAGTGGAATCTGTGCCTTCACTCTATTGCCGAAGCCGACGACTTCTTCGATGTTAGACTAA
AA sequence Show only first row Show all	>Lus10003330 pacid=23148029 polypeptide=Lus10003330 locus=Lus10003330.g ID=Lus10003330.BGIv1.0 annot-version=v1.0 MGREVYGGVSNGSPVQVHLYDQGVRAGSLGLMINSIVRLFFSLAIDPLAGKLGVKLLWGGVNLILGICLAMTVVITKAAESERRLGGVEEPSFGIKIGAI ALFAILGVPLAVTFSIPCAMASIYSQRSGAGQGLSMGIVNLAICLPQMLVSIVSGPLDAAFGGGNLPAFLVGAVVAVVSGICAFTLLPKPTTSSMLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10003330 [exp]	0	1
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	7.1	0.7101
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10006497 [exp]	10.4	0.7169
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10031394 [exp]	20.0	0.7075
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032041 [exp]	42.6	0.6759
AT5G35320			unknown protein		Lus10020176 [exp]	74.6	0.6737
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10026362 [exp]	122.5	0.6516
AT5G40510			Sucrase/ferredoxin-like family...		Lus10002520 [exp]	137.1	0.6224
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10018791 [exp]	172.3	0.6258
AT1G71730			unknown protein		Lus10029741 [exp]	189.0	0.5888
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	209.5	0.6151

Compare expression of checked genes

Lus10003330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.