Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35200 147 / 3e-43 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 139 / 5e-40 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 138 / 7e-40 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 137 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 70 / 8e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 69 / 2e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 68 / 3e-13 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 66 / 3e-12 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 62 / 5e-11 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76220 60 / 2e-10 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022635 [exp] 379 / 2e-134 AT4G35200 175 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 236 / 6e-78 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 235 / 2e-77 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 233 / 7e-77 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014448 [exp] 232 / 7e-77 AT2G17080 189 / 4e-60 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 232 / 3e-76 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 231 / 6e-76 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 231 / 6e-76 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014449 [exp] 230 / 1e-75 AT2G17080 213 / 6e-69 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G142700 [exp] 170 / 2e-51 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 156 / 2e-46 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 139 / 1e-39 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 138 / 2e-39 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 136 / 1e-38 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 135 / 3e-38 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 119 / 5e-32 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 118 / 6e-32 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 114 / 3e-30 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 112 / 7e-30 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10003332 pacid=23148040 polypeptide=Lus10003332 locus=Lus10003332.g ID=Lus10003332.BGIv1.0 annot-version=v1.0 ATGGCATCCATCTCATTCCAGGATCGATCCAACAGTCTGCCGACAAGGACACACCCTCTAGCATCCGAATTCGATGAGCAAGTCTGCAGATTGAGGCGGT CATCATCAATAGGACACAAGCTGAATAGCCTTCAGGATCTCTATGATTGTGTTGACAAGTTCTTACAACTACCAACAACCAAACAATCTTTAATCCGTGA CCAGAAATCCTTCAACGAGGCGCTGGATGGATCCTTAAGGCTGTTGGATCTCTGCAACACGGCCAAGGATTCCCTGTCCCAGATGAACGATTCGTTGGCT CAACTGCAATCAGCGATTCGTAGGAGGCATGACTTGGAAGGAGAGAGTAAGAGGTTCCTTAAATCTAGGAAGCTTGTGAAGAAAGTCATCATGATACAGA GTGCCTTACGCAATAAGTCATCTTCTTCCATGTTGGGAGAAGTTGAGTCCATTGTTGTTGAGGTTTTGGAGAGTTTGCTGTGTTTCGTATCGCAATCGAG CTCCTCCAAATCGAGGGGTTGGTTGTTGGTTTCCAAAATGATGGGAATTAGACAGAAGACCGATGATGACAACGAGATCAACGAATTTGCAGAGGTGGAT TCCTGTCTGAAGATGAAGATAGTTTCTTGTGAGGAAGTACAAGTTCATCTAAAGAACTTGCAGCCATGCATTCAAGATCTCGAGGAAGGAGTTGAGTCAT TGTTCAGGAGGTTGATCAAAACTAGATCCTCCATTCTCAACATCAACAATGTTTAG
AA sequence Show only first row Show all	>Lus10003332 pacid=23148040 polypeptide=Lus10003332 locus=Lus10003332.g ID=Lus10003332.BGIv1.0 annot-version=v1.0 MASISFQDRSNSLPTRTHPLASEFDEQVCRLRRSSSIGHKLNSLQDLYDCVDKFLQLPTTKQSLIRDQKSFNEALDGSLRLLDLCNTAKDSLSQMNDSLA QLQSAIRRRHDLEGESKRFLKSRKLVKKVIMIQSALRNKSSSSMLGEVESIVVEVLESLLCFVSQSSSSKSRGWLLVSKMMGIRQKTDDDNEINEFAEVD SCLKMKIVSCEEVQVHLKNLQPCIQDLEEGVESLFRRLIKTRSSILNINNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35200			Arabidopsis protein of unknown...		Lus10003332 [exp]	0	1
AT4G35200			Arabidopsis protein of unknown...		Lus10022635 [exp]	1.0	0.9698
AT1G62770			Plant invertase/pectin methyle...		Lus10032230 [exp]	4.0	0.9577
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	4.9	0.9425
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10038025 [exp]	5.8	0.9001
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	6.6	0.9481
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10003022 [exp]	8.8	0.9420
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	9.2	0.9571
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10034208 [exp]	9.3	0.8908
AT1G62770			Plant invertase/pectin methyle...		Lus10024593 [exp]	12.0	0.9217
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	12.8	0.9440

Compare expression of checked genes

Lus10003332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.