Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17040 281 / 2e-94 NAC ANAC036 NAC domain containing protein 36 (.1) AT2G02450 186 / 3e-56 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT5G39820 173 / 1e-51 NAC ANAC094 NAC domain containing protein 94 (.1) AT1G26870 169 / 3e-49 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G69490 155 / 1e-45 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G62700 156 / 8e-45 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT2G43000 153 / 8e-45 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT4G27410 154 / 1e-44 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT3G17730 150 / 5e-44 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G61430 153 / 6e-44 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022636 [exp] 505 / 0 AT2G17040 287 / 6e-97 NAC domain containing protein 36 (.1) Lus10025118 [exp] 303 / 8e-103 AT2G17040 258 / 1e-85 NAC domain containing protein 36 (.1) Lus10023966 [exp] 293 / 7e-99 AT2G17040 268 / 3e-89 NAC domain containing protein 36 (.1) Lus10008420 [exp] 186 / 7e-56 AT2G02450 320 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008419 [exp] 185 / 4e-55 AT2G02450 327 / 7e-109 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10003367 [exp] 185 / 3e-54 AT2G02450 333 / 3e-110 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10023208 [exp] 179 / 3e-54 AT2G02450 321 / 3e-108 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10037178 [exp] 180 / 4e-53 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10036749 [exp] 180 / 4e-53 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141600 [exp] 294 / 9e-100 AT2G17040 314 / 6e-108 NAC domain containing protein 36 (.1) Potri.005G103200 [exp] 215 / 6e-69 AT2G17040 249 / 6e-83 NAC domain containing protein 36 (.1) Potri.003G046700 [exp] 189 / 3e-57 AT2G02450 318 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.004G230800 [exp] 179 / 1e-53 AT2G02450 311 / 2e-103 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.017G082000 [exp] 174 / 2e-51 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G126901 [exp] 170 / 7e-50 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.010G166200 [exp] 166 / 1e-49 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.011G123300 [exp] 159 / 2e-46 AT4G27410 354 / 2e-122 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.004G038000 [exp] 158 / 8e-46 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.008G089000 [exp] 156 / 1e-45 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10003333 pacid=23148061 polypeptide=Lus10003333 locus=Lus10003333.g ID=Lus10003333.BGIv1.0 annot-version=v1.0 ATGAGTGACACTATTGATCAAATGACTTCAGAACAGCACCAATTCACCCTGCCCGGATTCAGATTCCACCCCACTGAGGAGGAGCTCATTGATTTCTACC TAAACAACATGGTCTTTGGAAAGAAGCTCAGTCTCGATGTCATCGGATATCTCAACATCTACCGCTACGATCCTAGAGACCTTCCAAAACTGGCGAAGAT AAATGGGGAGAGGGAGTGGTACTTTATTGTGCCTAGGGACAGGAAGCATGGAGGAAATGGGCGCCCGAACCGGACAACTGAGAAAGGGTTTTGGAAAGCG ACCGGTTCGGATCGGAAGATATGGCGGTTATCTGAGCCAAAGAGGCAGATTGGGTTGAGGAAGACTCTGGTTTTCTACCAAGGCAGGGCACCTAAGGGCA TCAAAACCGATTGGGTCATGAACGAGTATCGCCTCCCCGATTCCTCCTCCCCTCTCCCCAAGGAAGTAGTATTGTGCAAGATATACAGAAAGGCAACATC TTTGAGGGTATTGGAGCAAAGAGCAGAGATGGAAGGACAACATCAACAACAACACTCACAATTCTCATCTCCATTGGACACGTCATCACCACCCTTGTCC ATGTCATCATCGTTCTGTGGCAGCAGCACTACTGGTCCACGTCAGCACCAGCAGGAGGAGGAGGACGGCCCACCACACCAGATGCTACTCGGACCAATGG AAGACAGACACGTGGCGAGTTTCGTGAAGAGGGAAGAAGCTGATGATGATCATCATCCTAGCTATGATGCAAAGGGGATAATCAACCACTGCAATTTGCT TGAACTCCAAGTGCCTAAGATCAGTATGGACTGGAACCAAGACCAGTTTTGGCTGGCAAGCCCTTGGCTTCATCAGAATTTGACCCCTTTGGCTAATCTC TTGAACTTGTAA
AA sequence Show only first row Show all	>Lus10003333 pacid=23148061 polypeptide=Lus10003333 locus=Lus10003333.g ID=Lus10003333.BGIv1.0 annot-version=v1.0 MSDTIDQMTSEQHQFTLPGFRFHPTEEELIDFYLNNMVFGKKLSLDVIGYLNIYRYDPRDLPKLAKINGEREWYFIVPRDRKHGGNGRPNRTTEKGFWKA TGSDRKIWRLSEPKRQIGLRKTLVFYQGRAPKGIKTDWVMNEYRLPDSSSPLPKEVVLCKIYRKATSLRVLEQRAEMEGQHQQQHSQFSSPLDTSSPPLS MSSSFCGSSTTGPRQHQQEEEDGPPHQMLLGPMEDRHVASFVKREEADDDHHPSYDAKGIINHCNLLELQVPKISMDWNQDQFWLASPWLHQNLTPLANL LNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10003333 [exp]	0	1
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	1.0	0.9431
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10008004 [exp]	1.4	0.9110
AT2G23140			RING/U-box superfamily protein...		Lus10032023 [exp]	2.4	0.9087
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	2.8	0.8926
AT3G43660			Vacuolar iron transporter (VIT...		Lus10028596 [exp]	4.0	0.8761
AT3G53810			Concanavalin A-like lectin pro...		Lus10040774 [exp]	4.5	0.8876
AT5G10530			Concanavalin A-like lectin pro...		Lus10007074 [exp]	4.5	0.8831
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10013834 [exp]	4.9	0.8852
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10016042 [exp]	6.8	0.8712
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	7.7	0.8867

Compare expression of checked genes

Lus10003333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.